Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-155 553.1 301 100.0
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-155 553.1 301 100.0
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.3e-152 543.1 301 98.3
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.3e-152 543.1 301 98.3
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 6.2e-142 507.7 304 92.4
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 4.5e-132 474.9 311 80.4
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-126 455.7 307 84.7
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.4e-125 452.6 311 83.9
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 5.3e-125 451.4 307 84.4
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 4.5e-124 448.4 310 82.3
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 5.8e-124 448.0 312 83.3
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 2.9e-123 445.7 311 83.0
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 8.4e-123 444.1 311 83.0
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.7e-118 428.7 313 79.6
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 8.2e-118 427.6 312 76.0
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.2e-116 423.7 310 80.3
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.2e-108 397.1 316 77.2
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.1e-106 390.6 307 74.6
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.8e-80 303.5 309 60.2
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 5.5e-74 282.0 300 60.7
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.8e-72 276.9 298 61.4
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.1e-69 267.7 300 55.7
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-67 261.2 305 56.4
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.0e-67 261.2 305 56.4
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.0e-67 261.2 305 56.4
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 1.0e-67 261.2 297 58.6
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 2.3e-67 260.0 302 58.3
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 3.3e-66 256.1 302 51.3
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 3.0e-64 249.6 300 51.3
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.9e-62 242.3 291 53.6
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 6.4e-62 241.9 295 58.6
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.3e-54 217.6 289 52.9
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 8.6e-51 204.9 325 43.1
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 8.6e-51 204.9 325 45.2
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 8.1e-49 198.4 332 48.2
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.1e-48 198.0 329 42.6
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 8.9e-48 194.9 329 41.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.4e-47 193.0 329 41.6
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.9e-46 189.9 331 41.1
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 7.1e-45 185.3 325 43.1
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.2e-44 184.5 342 43.6
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 6.6e-43 178.7 334 43.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.5e-42 177.6 326 42.6
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.5e-42 177.6 327 38.2
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.4e-40 171.0 311 40.8
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 8.9e-40 168.3 322 37.9
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.4e-39 166.4 327 38.5
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 4.9e-38 162.5 316 39.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.9e-37 160.6 307 39.4
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.2e-37 159.8 311 34.7
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 4.2e-37 159.5 311 38.3
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 2.7e-36 156.8 329 41.6
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 6.0e-36 155.6 310 40.6
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 2.3e-35 153.7 315 34.6
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 3.9e-35 152.9 317 35.3
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.7e-35 151.8 309 40.8
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.7e-35 151.8 321 40.8
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.5e-34 151.0 309 39.8
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.9e-34 150.6 324 40.7
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.3e-34 149.8 322 41.6
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.3e-34 149.8 322 34.5
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 5.6e-34 149.1 310 40.6
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 5.6e-34 149.1 317 37.5
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.6e-34 149.1 321 42.1
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 7.3e-34 148.7 337 38.9
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 7.3e-34 148.7 320 41.6
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.8e-33 146.7 324 32.4
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 3.6e-33 146.4 298 35.9
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 6.2e-33 145.6 323 38.7
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.8e-32 144.1 328 33.2
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 9.0e-32 141.7 325 35.1
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.5e-31 141.0 324 35.5
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 3.4e-31 139.8 335 39.1
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 4.4e-31 139.4 333 39.6
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 5.8e-31 139.0 303 41.9
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 5.8e-31 139.0 322 38.2
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 5.8e-31 139.0 322 38.2
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.6e-31 138.7 333 39.6
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.3e-30 137.9 325 33.2
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.7e-30 137.5 313 39.9
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 2.2e-30 137.1 305 36.4
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 2.9e-30 136.7 327 36.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 3.8e-30 136.3 313 39.3
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 3.8e-30 136.3 317 42.0
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 3.8e-30 136.3 308 34.7
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.9e-30 136.0 330 31.8
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-29 134.8 328 39.0
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.1e-29 134.8 301 38.2
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.4e-29 134.4 325 31.7
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.4e-29 134.4 333 34.8
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.4e-29 134.4 323 41.8
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.4e-29 134.4 326 31.6
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.9e-29 134.0 317 40.4
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.9e-29 134.0 318 41.8
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.2e-29 133.3 330 40.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 5.4e-29 132.5 330 33.9
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 7.1e-29 132.1 307 31.9
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.2e-28 131.3 323 30.7
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.6e-28 131.0 325 30.8
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 4.6e-28 129.4 317 37.2
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.6e-28 129.4 307 31.6
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.0e-28 129.0 283 38.9
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 6.0e-28 129.0 321 30.8
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 5.1e-27 125.9 304 34.5
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 6.6e-27 125.6 298 33.6
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 8.7e-27 125.2 296 38.2
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.3e-26 123.2 325 30.5
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.3e-25 121.3 320 38.8
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.8e-25 120.2 323 38.4
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 8.1e-25 118.6 314 31.2
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 5.3e-24 115.9 322 33.5
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 3.4e-23 113.2 322 29.8
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 3.4e-23 113.2 305 32.5
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 7.6e-23 112.1 162 46.3
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.4e-21 107.1 320 30.6
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 1.6e-20 104.4 205 36.1
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.1e-20 104.0 290 29.0
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.0e-19 101.7 308 38.0
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.0e-19 101.7 318 36.5
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.8e-19 100.9 315 32.4
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.0e-19 100.1 317 31.5
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.1e-18 98.2 285 31.6
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.9e-18 97.4 304 35.2
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.9e-18 97.4 201 35.3
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.9e-18 97.4 294 30.6
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.5e-18 97.1 297 27.6
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 2.1e-17 94.0 323 31.6
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.1e-17 94.0 294 27.2
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.1e-16 91.7 194 36.6
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.8e-16 90.9 306 31.4
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 9.0e-16 88.6 300 29.0
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 1.3e-14 84.7 261 38.3
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 3.2e-13 80.1 151 35.1
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 4.2e-13 79.7 262 31.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 9.3e-13 78.6 281 30.6
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.2e-12 78.2 268 38.4
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 2.7e-12 77.0 326 32.8
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 3.5e-12 76.6 295 23.7
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 4.6e-12 76.3 274 29.6
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.3e-11 74.7 283 29.0
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.5e-10 71.2 176 27.8
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.5e-10 70.5 77 44.2
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.3e-10 69.7 170 30.6
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.4e-10 68.9 229 32.3
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 9.6e-10 68.6 178 29.2
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 8.2e-09 65.5 263 30.4
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 8.2e-09 65.5 254 34.6
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.4e-08 63.9 294 31.3
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 3.4e-07 60.1 136 33.8


User provided reference genes

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