Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-27 125.2 60 100.0
BcaC08g46254 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-27 125.2 60 100.0
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-27 125.2 60 100.0
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 2.6e-23 111.3 60 88.3
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-22 108.6 60 85.0
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 1.7e-22 108.6 60 85.0
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 1.7e-22 108.6 60 85.0
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 2.9e-22 107.8 60 86.7
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 2.9e-22 107.8 60 83.3
Sp4g00870 Schrenkiella parvula HOM05D001579 ORTHO05D003470 3.7e-22 107.5 60 86.7
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 6.4e-22 106.7 58 84.5
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 5.4e-21 103.6 58 82.8
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 5.4e-21 103.6 57 84.2
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 7.0e-21 103.2 57 84.2
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 7.0e-21 103.2 57 86.0
CSS0030455 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 7.0e-21 103.2 57 86.0
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 7.0e-21 103.2 57 86.0
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 1.2e-20 102.4 57 84.2
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 1.2e-20 102.4 57 82.5
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.6e-20 102.1 57 80.7
vmacro11113 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.6e-20 102.1 57 86.0
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 2.0e-20 101.7 57 84.2
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 2.0e-20 101.7 57 80.7
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 2.7e-20 101.3 57 80.7
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 2.7e-20 101.3 57 80.7
Lj7A248G12 Lonicera japonica HOM05D001579 ORTHO05D003470 2.7e-20 101.3 57 82.5
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 2.7e-20 101.3 57 80.7
Lalb_Chr03g0025681 Lupinus albus HOM05D001579 ORTHO05D003470 2.7e-20 101.3 57 80.7
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 2.7e-20 101.3 57 80.7
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 2.7e-20 101.3 57 80.7
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 3.5e-20 100.9 57 80.7
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 3.5e-20 100.9 57 78.9
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 3.5e-20 100.9 57 80.7
CARHR265880 Cardamine hirsuta HOM05D001579 ORTHO05D003470 4.6e-20 100.5 56 83.9
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 4.6e-20 100.5 57 78.9
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 4.6e-20 100.5 58 81.0
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 4.6e-20 100.5 60 75.0
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 4.6e-20 100.5 56 85.7
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 4.6e-20 100.5 56 85.7
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 4.6e-20 100.5 57 82.5
Cc00_g17000 Coffea canephora HOM05D001579 ORTHO05D003470 6.0e-20 100.1 57 78.9
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 6.0e-20 100.1 57 78.9
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 6.0e-20 100.1 57 78.9
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 6.0e-20 100.1 57 78.9
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 1.0e-19 99.4 57 78.9
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 1.0e-19 99.4 58 79.3
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.0e-19 99.4 58 79.3
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.0e-19 99.4 58 79.3
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.0e-19 99.4 58 79.3
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.0e-19 99.4 58 79.3
Glyma.17G231300 Glycine max HOM05D001579 ORTHO05D003470 1.0e-19 99.4 57 78.9
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.3e-19 99.0 56 83.9
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 1.3e-19 99.0 56 83.9
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 1.3e-19 99.0 57 77.2
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 1.3e-19 99.0 57 78.9
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 1.3e-19 99.0 56 80.4
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 1.3e-19 99.0 56 82.1
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 1.3e-19 99.0 57 77.2
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 1.7e-19 98.6 56 82.1
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 1.7e-19 98.6 57 77.2
C06p30160 Brassica napus HOM05D001579 ORTHO05D003470 1.7e-19 98.6 60 80.0
BolC6t38178H Brassica oleracea HOM05D001579 ORTHO05D003470 1.7e-19 98.6 60 80.0
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.7e-19 98.6 56 82.1
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 1.7e-19 98.6 56 83.9
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.7e-19 98.6 57 77.2
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.7e-19 98.6 57 77.2
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.7e-19 98.6 57 77.2
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 1.7e-19 98.6 56 80.4
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 1.7e-19 98.6 57 78.9
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 2.3e-19 98.2 56 80.4
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 2.3e-19 98.2 56 80.4
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 3.0e-19 97.8 56 82.1
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 3.0e-19 97.8 57 75.4
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 3.0e-19 97.8 56 80.4
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 3.0e-19 97.8 56 80.4
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 3.0e-19 97.8 56 82.1
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 3.0e-19 97.8 57 78.9
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.0e-19 97.8 57 78.9
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.0e-19 97.8 57 78.9
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.0e-19 97.8 57 78.9
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.0e-19 97.8 57 78.9
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 3.0e-19 97.8 56 80.4
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 3.0e-19 97.8 56 80.4
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 3.0e-19 97.8 56 80.4
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 3.0e-19 97.8 56 78.6
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 3.9e-19 97.4 57 77.2
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 3.9e-19 97.4 57 77.2
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 3.9e-19 97.4 58 72.4
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 3.9e-19 97.4 55 81.8
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 3.9e-19 97.4 57 75.4
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 3.9e-19 97.4 57 75.4
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 3.9e-19 97.4 57 75.4
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 3.9e-19 97.4 56 80.4
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 3.9e-19 97.4 56 80.4
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 3.9e-19 97.4 56 78.6
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 5.0e-19 97.1 57 77.2
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 5.0e-19 97.1 56 80.4
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 5.0e-19 97.1 58 70.7
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 5.0e-19 97.1 55 81.8
Lsat_1_v5_gn_2_67440 Lactuca sativa HOM05D001579 ORTHO05D003470 5.0e-19 97.1 56 80.4
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 5.0e-19 97.1 56 78.6
Cre09.g389430 Chlamydomonas reinhardtii HOM05D001579 ORTHO05D003470 6.6e-19 96.7 56 75.0
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 6.6e-19 96.7 56 80.4
Hma1.2p1_0299F.1_g117910 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 6.6e-19 96.7 56 78.6
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 6.6e-19 96.7 57 77.2
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 8.6e-19 96.3 57 77.2
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 8.6e-19 96.3 58 70.7
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 8.6e-19 96.3 56 80.4
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 8.6e-19 96.3 56 78.6
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 8.6e-19 96.3 56 76.8
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 1.1e-18 95.9 56 80.4
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 1.1e-18 95.9 57 73.7
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.5e-18 95.5 57 75.4
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.5e-18 95.5 57 75.4
Hund11566 Selenicereus undatus HOM05D001579 ORTHO05D003470 1.5e-18 95.5 57 78.9
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 1.9e-18 95.1 56 78.6
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 1.9e-18 95.1 56 78.6
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 1.9e-18 95.1 57 75.4
BcaC08g45384 Brassica carinata HOM05D001579 ORTHO05D003470 2.5e-18 94.7 57 78.9
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 3.3e-18 94.4 56 78.6
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 3.3e-18 94.4 56 76.8
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 3.3e-18 94.4 56 78.6
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 3.3e-18 94.4 57 77.2
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 3.3e-18 94.4 57 78.9
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 3.3e-18 94.4 57 77.2
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 3.3e-18 94.4 56 78.6
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 3.3e-18 94.4 56 78.6
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 3.3e-18 94.4 56 78.6
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 3.3e-18 94.4 56 78.6
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 3.3e-18 94.4 56 78.6
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 3.3e-18 94.4 56 78.6
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 4.3e-18 94.0 56 78.6
PRCOL_00000627 Prasinoderma coloniale HOM05D001579 ORTHO05D003470 4.3e-18 94.0 57 73.7
SEGI_28257 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 4.3e-18 94.0 57 75.4
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 5.6e-18 93.6 56 76.8
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 5.6e-18 93.6 56 76.8
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 5.6e-18 93.6 56 76.8
CDE06G1318 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 7.3e-18 93.2 56 78.6
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 7.3e-18 93.2 56 76.8
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 9.5e-18 92.8 56 76.8
QL11p043604 Quercus lobata HOM05D001579 ORTHO05D003470 9.5e-18 92.8 55 78.2
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 1.2e-17 92.4 56 76.8
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 1.2e-17 92.4 56 76.8
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 1.6e-17 92.0 56 76.8
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 1.6e-17 92.0 56 71.4
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 2.8e-17 91.3 57 75.4
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 4.7e-17 90.5 56 76.8
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 1.4e-16 89.0 56 71.4
MCO10G005 Micromonas commoda HOM05D001579 ORTHO05D003470 1.4e-16 89.0 56 69.6
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 1.4e-16 89.0 57 73.7
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 3.1e-16 87.8 56 75.0
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 1.2e-15 85.9 50 80.0
ATR1101G101 Amborella trichopoda HOM05D001579 ORTHO05D003470 2.0e-15 85.1 55 74.5
SalBow6G2679 Salvia bowleyana HOM05D001579 ORTHO05D003470 7.5e-15 83.2 62 64.5
CiPaw.01G010000 Carya illinoinensis HOM05D001579 ORTHO05D003470 8.3e-14 79.7 49 77.6
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 3.2e-13 77.8 40 87.5
PSO170G0890 Papaver somniferum HOM05D001579 ORTHO05D003470 4.1e-13 77.4 56 69.6
CARHR112710 Cardamine hirsuta HOM05D001579 ORTHO05D003470 5.4e-13 77.0 40 90.0
Haze_27501 Corylus avellana HOM05D001579 ORTHO05D003470 1.3e-11 72.4 51 64.7
Cfa025854 Carpinus fangiana HOM05D001579 ORTHO05D003470 2.3e-11 71.6 54 59.3
DCAR_006198 Daucus carota HOM05D001579 ORTHO05D003470 3.9e-11 70.9 123 38.2
vmacro02105 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.5e-10 68.9 61 60.7


User provided reference genes

Program Settings