Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 1.7e-38 162.2 80 100.0
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 9.4e-29 129.8 143 54.5
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.4e-16 89.4 122 47.5
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.6e-15 85.9 137 44.5
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 1.6e-15 85.9 137 44.5
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 3.5e-15 84.7 137 43.8
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 1.0e-14 83.2 122 45.1
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 3.8e-14 81.3 126 44.4
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 4.2e-13 77.8 135 40.7
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 5.5e-13 77.4 124 41.9
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 5.5e-13 77.4 133 41.4
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 5.5e-13 77.4 133 41.4
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-12 76.3 135 40.7
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 4.7e-12 74.3 131 41.2
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 4.7e-12 74.3 131 41.2
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 4.7e-12 74.3 131 41.2
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.8e-11 72.4 42 83.3
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.3e-11 72.0 40 85.0
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 2.3e-11 72.0 131 40.5
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 2.3e-11 72.0 40 82.5
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 6.7e-11 70.5 40 82.5
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 6.7e-11 70.5 40 82.5
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 6.7e-11 70.5 40 82.5
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.5e-10 69.3 42 78.6
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 3.3e-10 68.2 40 77.5
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 4.1e-08 61.2 40 65.0
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 7.0e-08 60.5 40 67.5
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 1.2e-07 59.7 40 67.5
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 2.7e-07 58.5 40 65.0
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 2.7e-07 58.5 40 65.0
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 2.7e-07 58.5 40 65.0
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 3.5e-07 58.2 40 62.5
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 3.5e-07 58.2 40 62.5
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 3.5e-07 58.2 40 62.5
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 3.5e-07 58.2 40 62.5
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 4.5e-07 57.8 40 60.0
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 4.5e-07 57.8 40 62.5
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 5.9e-07 57.4 40 62.5
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 5.9e-07 57.4 40 62.5
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.9e-07 57.4 40 62.5
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.9e-07 57.4 40 62.5
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.9e-07 57.4 40 62.5
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 5.9e-07 57.4 40 62.5
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 7.7e-07 57.0 40 65.0
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 7.7e-07 57.0 40 65.0
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 7.7e-07 57.0 40 62.5
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 7.7e-07 57.0 40 65.0
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 1.0e-06 56.6 40 62.5
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.0e-06 56.6 40 60.0
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 1.0e-06 56.6 40 65.0
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 1.0e-06 56.6 40 62.5
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.3e-06 56.2 40 60.0
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.3e-06 56.2 40 60.0
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 1.3e-06 56.2 40 60.0
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.3e-06 56.2 40 60.0
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.3e-06 56.2 40 60.0
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 1.7e-06 55.8 40 62.5
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 2.2e-06 55.5 40 60.0
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.2e-06 55.5 40 60.0
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 2.2e-06 55.5 40 60.0
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.2e-06 55.5 40 62.5
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 2.2e-06 55.5 40 62.5
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 2.9e-06 55.1 40 60.0
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 2.9e-06 55.1 40 60.0
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 2.9e-06 55.1 40 60.0
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 2.9e-06 55.1 42 57.1
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 2.9e-06 55.1 40 60.0
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 3.8e-06 54.7 40 60.0
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 3.8e-06 54.7 40 57.5
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 3.8e-06 54.7 38 57.9
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.8e-06 54.7 40 60.0
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.8e-06 54.7 40 60.0
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 3.8e-06 54.7 40 60.0
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 3.8e-06 54.7 40 60.0
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 3.8e-06 54.7 38 63.2
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 5.0e-06 54.3 40 60.0
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 5.0e-06 54.3 38 63.2
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 5.0e-06 54.3 38 63.2
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 5.0e-06 54.3 40 57.5


User provided reference genes

Program Settings