Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 3.8e-168 594.7 297 100.0
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 2.3e-157 558.9 310 92.6
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 6.7e-157 557.4 309 92.6
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 2.3e-136 489.2 328 80.8
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 3.5e-121 438.7 334 74.3
Sp5g23040 Schrenkiella parvula HOM05D002477 ORTHO05D001927 7.6e-100 367.9 353 62.0
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 3.9e-96 355.5 305 65.2
BcaNung05110 Brassica carinata HOM05D002477 ORTHO05D001927 1.7e-91 340.1 282 70.6
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 3.8e-91 339.0 289 64.0
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 2.4e-85 319.7 304 60.2
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 2.9e-83 312.8 300 61.7
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 5.5e-82 308.5 288 60.1
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 1.2e-65 254.2 338 48.5
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 3.0e-48 196.4 447 34.9
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 3.9e-48 196.1 459 34.9
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.3e-38 164.5 161 56.5
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 8.0e-25 118.6 363 28.9
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 1.0e-24 118.2 347 29.1
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 1.2e-23 114.8 355 29.0
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 1.2e-23 114.8 355 29.0
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 2.0e-23 114.0 354 28.8
Aa31LG1G320 Aethionema arabicum HOM05D010589 ORTHO05D001927 2.8e-22 110.2 365 29.3
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 6.3e-22 109.0 351 29.6
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 8.3e-22 108.6 357 26.9
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.8e-21 107.5 370 27.6
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 2.7e-20 103.6 319 29.2
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 4.5e-20 102.8 377 27.1
BcaC05g25396 Brassica carinata HOM05D010589 ORTHO05D001927 7.8e-20 102.1 307 29.6
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 7.8e-20 102.1 373 26.5
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 1.3e-19 101.3 337 28.8
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 2.3e-19 100.5 353 26.6
CARHR015310 Cardamine hirsuta HOM05D010589 ORTHO05D001927 2.9e-19 100.1 361 27.7
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.5e-18 97.8 297 27.9
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 1.5e-18 97.8 432 24.8
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 4.7e-17 92.8 208 34.6
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 1.4e-16 91.3 219 32.9
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 2.2e-14 84.0 118 39.8
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 3.7e-14 83.2 128 37.5
Carub.0001s1457 Capsella rubella HOM05D010589 ORTHO05D001927 3.7e-14 83.2 387 24.8
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 6.4e-14 82.4 300 26.0
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 1.1e-13 81.6 402 25.6
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 2.4e-13 80.5 121 42.1
BcaB01g06386 Brassica carinata HOM05D010589 ORTHO05D001927 7.0e-13 79.0 94 45.7
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 1.2e-12 78.2 130 40.0
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.2e-12 78.2 130 40.0
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 1.2e-12 78.2 121 39.7
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.6e-12 77.8 130 39.2
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 3.5e-12 76.6 108 38.9
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 4.6e-12 76.3 96 43.8
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 7.8e-12 75.5 83 39.8
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 7.8e-12 75.5 94 45.7
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 7.8e-12 75.5 109 34.9
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.0e-11 75.1 111 35.1
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.3e-11 74.7 74 41.9
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 1.3e-11 74.7 129 38.8
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 1.3e-11 74.7 170 34.7
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.7e-11 74.3 264 25.8
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 1.7e-11 74.3 163 33.7
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 2.3e-11 73.9 291 25.8
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 3.0e-11 73.6 74 40.5
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 3.0e-11 73.6 123 40.7
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.0e-11 73.6 128 33.6
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 3.9e-11 73.2 129 37.2
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.9e-11 73.2 74 40.5
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 3.9e-11 73.2 93 45.2
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.9e-11 73.2 82 36.6
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.9e-11 73.2 82 36.6
SHI33652 Sapria himalayana HOM05D002477 ORTHO05D001927 3.9e-11 73.2 74 43.2
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 5.0e-11 72.8 129 37.2
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 5.0e-11 72.8 126 38.1
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 5.0e-11 72.8 82 36.6
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.0e-11 72.8 140 31.4
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 8.6e-11 72.0 95 44.2
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 8.6e-11 72.0 94 29.8
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.5e-10 71.2 145 29.0
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 1.5e-10 71.2 82 36.6
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.5e-10 71.2 83 41.0
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 1.9e-10 70.9 98 35.7
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.9e-10 70.9 302 24.2
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 1.9e-10 70.9 288 26.7
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 3.3e-10 70.1 95 43.2
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 3.3e-10 70.1 154 27.3
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 3.3e-10 70.1 72 43.1
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.3e-10 70.1 146 35.6
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 4.3e-10 69.7 145 28.3
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 4.3e-10 69.7 140 31.4
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 4.3e-10 69.7 260 26.2
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 5.6e-10 69.3 149 27.5
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 5.6e-10 69.3 84 38.1
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 7.3e-10 68.9 74 39.2
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 7.3e-10 68.9 100 36.0
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 9.5e-10 68.6 305 24.6
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 1.2e-09 68.2 88 44.3
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 1.6e-09 67.8 399 23.6
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 1.6e-09 67.8 100 34.0
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 2.1e-09 67.4 172 33.7
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 2.8e-09 67.0 128 28.9
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 2.8e-09 67.0 159 27.0
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 3.6e-09 66.6 76 39.5
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 3.6e-09 66.6 82 36.6
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 3.6e-09 66.6 153 34.6
FAN13G2553 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.7e-09 66.2 94 40.4
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 6.2e-09 65.9 110 35.5
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 6.2e-09 65.9 83 42.2
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 6.2e-09 65.9 142 33.1
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 8.0e-09 65.5 127 29.9
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 1.1e-08 65.1 71 39.4
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 1.1e-08 65.1 86 38.4
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.1e-08 65.1 125 29.6
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.4e-08 64.7 160 29.4
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.4e-08 64.7 89 36.0
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 1.8e-08 64.3 92 39.1
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 1.8e-08 64.3 126 35.7
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 2.3e-08 63.9 84 36.9
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 2.3e-08 63.9 74 36.5
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 3.1e-08 63.5 94 41.5
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 3.1e-08 63.5 343 24.5
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 3.1e-08 63.5 72 36.1
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 4.0e-08 63.2 82 32.9
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 5.2e-08 62.8 153 34.6
SGA_v2.0_scaffold70G23601 Striga asiatica HOM05D002477 ORTHO05D001927 5.2e-08 62.8 83 38.6
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 6.8e-08 62.4 208 27.9
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 6.8e-08 62.4 82 36.6
Lalb_Chr04g0259381 Lupinus albus HOM05D002477 ORTHO05D001927 6.8e-08 62.4 79 43.0
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 6.8e-08 62.4 104 32.7
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 8.9e-08 62.0 169 27.8
Oeu052600.1 Olea europaea HOM05D002477 ORTHO05D001927 1.5e-07 61.2 72 41.7
vmacro09464 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 1.5e-07 61.2 72 41.7
CDE02G2179 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 2.0e-07 60.8 72 40.3
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 2.0e-07 60.8 113 36.3
MSTRG.6732 Avicennia marina HOM05D002477 ORTHO05D001927 2.6e-07 60.5 72 38.9
PSO541G3271 Papaver somniferum HOM05D002477 ORTHO05D001927 2.6e-07 60.5 68 42.6
Duzib133G1113 Durio zibethinus HOM05D002477 ORTHO05D001927 4.4e-07 59.7 78 37.2
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 5.8e-07 59.3 120 34.2
Gohir.D07G093300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.5e-07 58.9 75 37.3
Gorai.001G100000 Gossypium raimondii HOM05D002477 ORTHO05D001927 7.5e-07 58.9 75 37.3
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 7.5e-07 58.9 178 25.8
PSO675G6033 Papaver somniferum HOM05D002477 ORTHO05D001927 9.8e-07 58.5 68 41.2
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 9.8e-07 58.5 122 37.7
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 1.3e-06 58.2 73 32.9
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.7e-06 57.8 92 38.0
Gohir.A07G088300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 4.9e-06 56.2 75 36.0
HanXRQChr11g0329911 Helianthus annuus HOM05D002477 ORTHO05D001927 6.4e-06 55.8 129 34.9
Phvul.006G012311 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 6.4e-06 55.8 74 40.5
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 8.3e-06 55.5 85 41.2
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 8.3e-06 55.5 124 35.5


User provided reference genes

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