Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46096 Brassica carinata HOM05D006811 ORTHO05D008419 5.2e-226 787.3 388 100.0
C06p39240 Brassica napus HOM05D006811 ORTHO05D008419 1.3e-224 782.7 388 99.2
A07p33010 Brassica napus HOM05D006811 ORTHO05D008419 1.3e-221 772.7 388 98.7
BraA07t30929Z Brassica rapa HOM05D006811 ORTHO05D008419 1.3e-221 772.7 388 98.7
BolC6t39018H Brassica oleracea HOM05D006811 ORTHO05D008419 4.7e-219 764.2 425 90.6
BcaB03g15309 Brassica carinata HOM05D006811 ORTHO05D008419 2.0e-217 758.8 386 96.6
Thhalv10018647m.g Eutrema salsugineum HOM05D006811 ORTHO05D008419 2.8e-203 711.8 390 90.5
Sp5g20950 Schrenkiella parvula HOM05D006811 ORTHO05D008419 2.8e-203 711.8 390 90.5
AL2G23270 Arabidopsis lyrata HOM05D006811 ORTHO05D008419 4.5e-193 677.9 395 85.8
Carub.0002s1184 Capsella rubella HOM05D006811 ORTHO05D008419 1.7e-192 676.0 395 85.3
CARHR057790 Cardamine hirsuta HOM05D006811 ORTHO05D008419 2.2e-192 675.6 395 85.8
AT1G65900 Arabidopsis thaliana HOM05D006811 ORTHO05D008419 2.1e-190 669.1 392 86.0
Aa31LG2G2700 Aethionema arabicum HOM05D006811 ORTHO05D008419 3.2e-175 618.6 391 78.8
THA.LOC104825578 Tarenaya hassleriana HOM05D006811 ORTHO05D008419 1.6e-158 563.1 376 74.5
Dinv28246 Davidia involucrata HOM05D006811 ORTHO05D008419 2.3e-144 516.2 384 68.0
Potri.017G139400 Populus trichocarpa HOM05D006811 ORTHO05D008419 5.5e-143 511.5 384 66.4
Sabra17G0117500 Salix brachista HOM05D006811 ORTHO05D008419 3.6e-142 508.8 384 66.1
MD17G1286700 Malus domestica HOM05D006811 ORTHO05D008419 6.8e-141 504.6 387 67.2
Peaxi162Scf00713g00019 Petunia axillaris HOM05D006811 ORTHO05D008419 2.0e-140 503.1 384 65.9
Lj6g0026577 Lotus japonicus HOM05D006811 ORTHO05D008419 1.3e-139 500.4 386 65.5
FvH4_1g27290 Fragaria vesca HOM05D006811 ORTHO05D008419 2.2e-139 499.6 380 67.1
PGSC0003DMG400016719 Solanum tuberosum HOM05D006811 ORTHO05D008419 2.8e-139 499.2 384 64.6
FAN23G2849 Fragaria x ananassa HOM05D006811 ORTHO05D008419 1.8e-138 496.5 393 64.4
Thecc.04G060000 Theobroma cacao HOM05D006811 ORTHO05D008419 5.4e-138 495.0 376 66.2
Hma1.2p1_0158F.1_g069620 Hydrangea macrophylla HOM05D006811 ORTHO05D008419 1.6e-137 493.4 386 64.8
Rhsim10G0185300 Rhododendron simsii HOM05D006811 ORTHO05D008419 1.6e-137 493.4 380 64.5
RcHm_v2.0_Chr3g0488721 Rosa chinensis HOM05D006811 ORTHO05D008419 1.6e-137 493.4 374 66.6
CiPaw.03G075800 Carya illinoinensis HOM05D006811 ORTHO05D008419 2.7e-137 492.7 384 65.9
Sopen02g025910 Solanum pennellii HOM05D006811 ORTHO05D008419 5.9e-137 491.5 384 64.6
arahy.Tifrunner.gnm1.ann1.A3RENN Arachis hypogaea HOM05D006811 ORTHO05D008419 7.8e-137 491.1 386 63.7
CSS0033706 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 1.3e-136 490.3 379 65.7
TAR622G1242 Trochodendron aralioides HOM05D006811 ORTHO05D008419 3.8e-136 488.8 383 64.2
GSVIVG01035212001 Vitis vinifera HOM05D006811 ORTHO05D008419 3.8e-136 488.8 381 64.8
Actinidia40414 Actinidia chinensis HOM05D006811 ORTHO05D008419 6.6e-136 488.0 387 63.0
Gorai.008G054100 Gossypium raimondii HOM05D006811 ORTHO05D008419 1.9e-135 486.5 382 65.2
Ca_17071_v3 Cicer arietinum L. HOM05D006811 ORTHO05D008419 2.5e-135 486.1 377 64.2
Migut.K00747 Erythranthe guttata HOM05D006811 ORTHO05D008419 2.5e-135 486.1 376 64.1
Gohir.A12G052300 Gossypium hirsutum HOM05D006811 ORTHO05D008419 2.5e-135 486.1 382 65.2
Cfa007746 Carpinus fangiana HOM05D006811 ORTHO05D008419 4.3e-135 485.3 386 64.5
SalBow5G0387 Salvia bowleyana HOM05D006811 ORTHO05D008419 4.3e-135 485.3 384 63.5
Nn4g24731 Nelumbo nucifera HOM05D006811 ORTHO05D008419 1.2e-134 483.8 382 62.6
Psat5g142440 Pisum sativum HOM05D006811 ORTHO05D008419 1.2e-134 483.8 385 64.2
Aqoxy3G04154 Aquilegia oxysepala HOM05D006811 ORTHO05D008419 1.6e-134 483.4 377 62.1
Eucgr.F02911 Eucalyptus grandis HOM05D006811 ORTHO05D008419 1.6e-134 483.4 383 63.4
SalBow5G5201 Salvia bowleyana HOM05D006811 ORTHO05D008419 2.8e-134 482.6 384 63.0
Lalb_Chr15g0085211 Lupinus albus HOM05D006811 ORTHO05D008419 3.6e-134 482.3 390 62.6
Cc07_g12750 Coffea canephora HOM05D006811 ORTHO05D008419 8.0e-134 481.1 385 63.4
CsaV3_4G000630 Cucumis sativus L. HOM05D006811 ORTHO05D008419 2.3e-133 479.6 390 62.8
VMungo0540G2025 Vigna mungo HOM05D006811 ORTHO05D008419 2.3e-133 479.6 382 63.9
Medtr3g064600 Medicago truncatula HOM05D006811 ORTHO05D008419 4.0e-133 478.8 385 63.1
MSTRG.15636 Avicennia marina HOM05D006811 ORTHO05D008419 8.9e-133 477.6 386 61.4
Glyma.11G212500 Glycine max HOM05D006811 ORTHO05D008419 8.9e-133 477.6 385 63.1
Glyma.18G043800 Glycine max HOM05D006811 ORTHO05D008419 1.2e-132 477.2 390 63.3
Nitab4.5_0000483g0290 Nicotiana tabacum HOM05D006811 ORTHO05D008419 4.4e-132 475.3 384 63.3
TPR.G26689 Trifolium pratense HOM05D006811 ORTHO05D008419 5.8e-132 474.9 385 62.9
CANSAT54G1721 Cannabis sativa HOM05D006811 ORTHO05D008419 1.3e-131 473.8 378 63.0
ClCG10G010680 Citrullus lanatus HOM05D006811 ORTHO05D008419 2.9e-131 472.6 377 63.9
DCAR_020444 Daucus carota HOM05D006811 ORTHO05D008419 2.9e-131 472.6 385 63.6
Hund22201 Selenicereus undatus HOM05D006811 ORTHO05D008419 4.9e-131 471.9 384 62.2
Ciclev10013413m.g Citrus clementina HOM05D006811 ORTHO05D008419 8.3e-131 471.1 386 64.5
Nitab4.5_0008137g0060 Nicotiana tabacum HOM05D006811 ORTHO05D008419 6.6e-128 461.5 423 57.9
EL10Ac4g08932 Beta vulgaris HOM05D006811 ORTHO05D008419 5.6e-127 458.4 378 60.8
Lsat_1_v5_gn_2_71780 Lactuca sativa HOM05D006811 ORTHO05D008419 5.2e-125 451.8 380 58.7
Duzib138G1484 Durio zibethinus HOM05D006811 ORTHO05D008419 1.3e-123 447.2 388 61.6
PGR004G2199 Punica granatum HOM05D006811 ORTHO05D008419 1.1e-122 444.1 375 60.8
FAN26G0959 Fragaria x ananassa HOM05D006811 ORTHO05D008419 1.2e-121 440.7 380 60.5
Sc06g0003070 Simmondsia chinensis HOM05D006811 ORTHO05D008419 4.6e-121 438.7 387 57.9
HanXRQChr14g0443391 Helianthus annuus HOM05D006811 ORTHO05D008419 6.0e-121 438.3 380 58.2
QL02p064229 Quercus lobata HOM05D006811 ORTHO05D008419 3.0e-120 436.0 430 55.8
TWI53G0648 Tripterygium wilfordii HOM05D006811 ORTHO05D008419 1.5e-119 433.7 337 64.1
CDE05G3344 Ceratophyllum demersum HOM05D006811 ORTHO05D008419 9.5e-119 431.0 374 58.0
unitig_0.g2638 Utricularia gibba HOM05D006811 ORTHO05D008419 4.0e-117 425.6 378 56.6
HanXRQChr12g0365711 Helianthus annuus HOM05D006811 ORTHO05D008419 1.7e-115 420.2 391 54.7
PSO063G4300 Papaver somniferum HOM05D006811 ORTHO05D008419 4.1e-114 415.6 392 53.8
Lj4A251G58 Lonicera japonica HOM05D006811 ORTHO05D008419 9.2e-114 414.5 417 53.0
Manes.02G081300 Manihot esculenta HOM05D006811 ORTHO05D008419 1.0e-112 411.0 312 64.7
ATR0807G007 Amborella trichopoda HOM05D006811 ORTHO05D008419 6.6e-112 408.3 373 54.7
AUR62003402 Chenopodium quinoa HOM05D006811 ORTHO05D008419 1.8e-109 400.2 400 52.8
AUR62004775 Chenopodium quinoa HOM05D006811 ORTHO05D008419 4.0e-109 399.1 378 54.2
FAN28G2567 Fragaria x ananassa HOM05D006811 ORTHO05D008419 6.8e-109 398.3 297 66.0
Atru.chr1.2130 Acer truncatum HOM05D006811 ORTHO05D008419 1.9e-106 390.2 290 64.5
vmacro20465 Vaccinium macrocarpon HOM05D006811 ORTHO05D008419 1.6e-105 387.1 354 57.3
SGA_v2.0_scaffold115G32048 Striga asiatica HOM05D006811 ORTHO05D008419 1.6e-102 377.1 287 63.1
Phvul.006G087200 Phaseolus vulgaris HOM05D006811 ORTHO05D008419 6.2e-102 375.2 318 60.1
Sed0027023 Sechium edule HOM05D006811 ORTHO05D008419 4.4e-100 369.0 310 60.6
ECA238G0794 Erigeron canadensis HOM05D006811 ORTHO05D008419 2.9e-99 366.3 385 50.4
HPP92_014601 Vanilla planifolia HOM05D006811 ORTHO05D008419 8.7e-88 328.2 299 53.5
Haze_14327 Corylus avellana HOM05D006811 ORTHO05D008419 4.9e-83 312.4 264 63.3
Cpa.g.sc178.33 Carica papaya HOM05D006811 ORTHO05D008419 5.1e-80 302.4 266 60.9
Prupe.3G014300 Prunus persica HOM05D006811 ORTHO05D008419 5.1e-80 302.4 232 65.9
Zm00001eb001500 Zea mays HOM05D006811 ORTHO05D008419 1.9e-74 283.9 268 54.9
MELO3C017973.2 Cucumis melo HOM05D006811 ORTHO05D008419 7.4e-71 271.9 224 62.9
Gohir.D12G050800 Gossypium hirsutum HOM05D006811 ORTHO05D008419 3.7e-70 269.6 227 62.6
Ah.06g191630 Amaranthus hybridus HOM05D006811 ORTHO05D008419 1.4e-69 267.7 389 42.4
DCAR_017976 Daucus carota HOM05D006811 ORTHO05D008419 6.1e-65 252.3 223 56.5
CSS0020523 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 9.1e-53 211.8 159 65.4
AagrBONN_evm.TU.Sc2ySwM_368.3231 Anthoceros agrestis HOM05D006811 ORTHO05D008419 5.9e-52 209.1 380 35.0
PSO782G1785 Papaver somniferum HOM05D006811 ORTHO05D008419 7.2e-50 202.2 204 49.0
arahy.Tifrunner.gnm1.ann1.JYBV0C Arachis hypogaea HOM05D006811 ORTHO05D008419 9.7e-47 191.8 163 63.2
FAN19G2462 Fragaria x ananassa HOM05D006811 ORTHO05D008419 7.0e-37 159.1 160 56.2
CSS0043986 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 1.6e-36 157.9 147 55.1
CBR_g31433 Chara braunii HOM05D006811 ORTHO05D008419 2.9e-35 153.7 395 29.9
HPP92_014605 Vanilla planifolia HOM05D006811 ORTHO05D008419 1.7e-30 137.9 137 49.6
Medtr3g073800 Medicago truncatula HOM05D006811 ORTHO05D008419 1.5e-26 124.8 92 66.3
Aa31LG2G2690 Aethionema arabicum HOM05D000356 ORTHO05D000265 4.7e-25 119.8 93 66.7
FAN28G1678 Fragaria x ananassa HOM05D006811 ORTHO05D008419 2.3e-24 117.5 87 71.3
A02p12460 Brassica napus HOM05D006811 ORTHO05D008419 5.7e-23 112.8 68 83.8
Os03g0120000 Oryza sativa ssp. japonica HOM05D006811 ORTHO05D008419 2.4e-21 107.5 82 64.6
FAN28G2576 Fragaria x ananassa HOM05D006811 ORTHO05D008419 1.5e-18 98.2 116 49.1
Cre02.g081050 Chlamydomonas reinhardtii HOM05D006811 ORTHO05D008419 3.3e-18 97.1 362 27.1
PRCOL_00005605 Prasinoderma coloniale HOM05D006811 ORTHO05D008419 6.1e-17 92.8 382 23.6
MCO05G199 Micromonas commoda HOM05D006811 ORTHO05D008419 2.2e-14 84.3 392 25.3
SEGI_18554 Sequoiadendron giganteum HOM05D006811 ORTHO05D008419 4.1e-13 80.1 68 50.0
PRCOL_00004838 Prasinoderma coloniale HOM05D006811 ORTHO05D008419 1.9e-10 71.2 377 22.3
Oeu032292.1 Olea europaea HOM05D006811 ORTHO05D008419 1.6e-09 68.2 52 67.3
arahy.Tifrunner.gnm1.ann1.XFK461 Arachis hypogaea HOM05D006811 ORTHO05D008419 3.6e-09 67.0 46 71.7
COL.COLO4_03698 Corchorus olitorius HOM05D006811 ORTHO05D008419 1.8e-08 64.7 68 50.0
SEGI_23786 Sequoiadendron giganteum HOM05D006811 ORTHO05D008419 2.3e-08 64.3 92 38.0


User provided reference genes

Program Settings