Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46081 Brassica carinata HOM05D003082 ORTHO05D003497 1.8e-44 182.6 118 100.0
BolC6t39029H Brassica oleracea HOM05D003082 ORTHO05D003497 1.7e-39 166.0 117 80.3
BcaB03g15296 Brassica carinata HOM05D003082 ORTHO05D003497 5.6e-38 161.0 118 77.1
A07p33090 Brassica napus HOM05D003082 ORTHO05D003497 5.6e-38 161.0 116 75.0
BcaC08g46082 Brassica carinata HOM05D003082 ORTHO05D003497 7.3e-38 160.6 117 88.9
BraA07t30937Z Brassica rapa HOM05D003082 ORTHO05D003497 6.2e-37 157.5 117 75.2
C06p39360 Brassica napus HOM05D003082 ORTHO05D003497 2.6e-35 152.1 113 86.7
Sp5g21120 Schrenkiella parvula HOM05D003082 ORTHO05D003497 3.8e-34 148.3 119 71.4
BcaB03g15297 Brassica carinata HOM05D003082 ORTHO05D003497 4.1e-33 144.8 112 79.5
BcaC03g14729 Brassica carinata HOM05D003082 ORTHO05D003497 5.6e-30 134.4 116 75.9
Sp7g04760 Schrenkiella parvula HOM05D003082 ORTHO05D003497 5.6e-30 134.4 117 63.2
BolC2t08308H Brassica oleracea HOM05D003082 ORTHO05D003497 2.1e-29 132.5 116 75.0
BcaB06g27069 Brassica carinata HOM05D003082 ORTHO05D003497 1.5e-27 126.3 117 60.7
AL7G46180 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 2.6e-27 125.6 117 64.1
Thhalv10027912m.g Eutrema salsugineum HOM05D003082 ORTHO05D003497 2.6e-27 125.6 116 64.7
AT5G37475 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 4.4e-27 124.8 117 64.1
C02p21740 Brassica napus HOM05D003082 ORTHO05D003497 2.9e-26 122.1 112 74.1
BcaB05g24148 Brassica carinata HOM05D003082 ORTHO05D003497 6.4e-26 120.9 116 66.4
AL2G23680 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 8.4e-26 120.6 116 65.5
BraA02t06402Z Brassica rapa HOM05D003082 ORTHO05D003497 1.1e-25 120.2 125 63.2
Carub.0002s1202 Capsella rubella HOM05D003082 ORTHO05D003497 2.4e-25 119.0 116 64.7
BcaB06g27692 Brassica carinata HOM05D003082 ORTHO05D003497 5.4e-25 117.9 121 62.8
A04p15210 Brassica napus HOM05D003082 ORTHO05D003497 1.2e-24 116.7 119 65.5
Aa31LG2G2810 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.6e-24 116.3 117 66.7
BcaC02g09568 Brassica carinata HOM05D003082 ORTHO05D003497 1.6e-24 116.3 118 58.5
C04p44240 Brassica napus HOM05D003082 ORTHO05D003497 1.6e-24 116.3 118 58.5
BcaC02g08888 Brassica carinata HOM05D003082 ORTHO05D003497 6.0e-24 114.4 119 59.7
CARHR215550 Cardamine hirsuta HOM05D003082 ORTHO05D003497 1.3e-23 113.2 115 60.0
Carub.0007s3263 Capsella rubella HOM05D003082 ORTHO05D003497 2.3e-23 112.5 116 71.6
THA.LOC104822082 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 2.3e-23 112.5 113 55.8
CARHR058010 Cardamine hirsuta HOM05D003082 ORTHO05D003497 5.1e-23 111.3 118 70.3
A02p13440 Brassica napus HOM05D003082 ORTHO05D003497 8.7e-23 110.5 121 62.0
THA.LOC104823823 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 1.9e-22 109.4 117 53.0
Lalb_Chr22g0353931 Lupinus albus HOM05D003082 ORTHO05D003497 3.3e-22 108.6 118 55.1
BolC4t25997H Brassica oleracea HOM05D003082 ORTHO05D003497 1.3e-21 106.7 116 56.0
AT1G66070 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 8.1e-21 104.0 118 66.9
C04p49430 Brassica napus HOM05D003082 ORTHO05D003497 8.1e-21 104.0 115 58.3
BolC4t26528H Brassica oleracea HOM05D003082 ORTHO05D003497 8.1e-21 104.0 115 58.3
Gohir.A02G051600 Gossypium hirsutum HOM05D003082 ORTHO05D003497 8.1e-21 104.0 115 52.2
Ciclev10002394m.g Citrus clementina HOM05D003082 ORTHO05D003497 1.1e-20 103.6 116 58.6
Gohir.D02G056500 Gossypium hirsutum HOM05D003082 ORTHO05D003497 1.1e-20 103.6 115 51.3
QL01p029277 Quercus lobata HOM05D003082 ORTHO05D003497 1.1e-20 103.6 116 48.3
Atru.chr1.1952 Acer truncatum HOM05D003082 ORTHO05D003497 1.4e-20 103.2 115 49.6
Migut.H01515 Erythranthe guttata HOM05D003082 ORTHO05D003497 1.8e-20 102.8 116 50.9
Glyma.16G215500 Glycine max HOM05D003082 ORTHO05D003497 1.8e-20 102.8 120 52.5
Gorai.005G062400 Gossypium raimondii HOM05D003082 ORTHO05D003497 1.8e-20 102.8 115 51.3
Lj2g0006781 Lotus japonicus HOM05D003082 ORTHO05D003497 1.8e-20 102.8 117 58.1
Potri.004G082200 Populus trichocarpa HOM05D003082 ORTHO05D003497 1.8e-20 102.8 117 53.8
A04p10590 Brassica napus HOM05D003082 ORTHO05D003497 2.4e-20 102.4 114 55.3
Glyma.09G165600 Glycine max HOM05D003082 ORTHO05D003497 3.1e-20 102.1 120 51.7
Dinv06240 Davidia involucrata HOM05D003082 ORTHO05D003497 5.3e-20 101.3 117 52.1
CiPaw.05G244300 Carya illinoinensis HOM05D003082 ORTHO05D003497 9.0e-20 100.5 117 47.9
VMungo0464G0847 Vigna mungo HOM05D003082 ORTHO05D003497 1.5e-19 99.8 118 61.0
Aa31LG9G17590 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.6e-19 99.0 117 49.6
BraA04t16722Z Brassica rapa HOM05D003082 ORTHO05D003497 3.4e-19 98.6 110 52.7
TWI60G0785 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 3.4e-19 98.6 117 47.0
TWI74G0632 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 4.5e-19 98.2 118 52.5
Aa31LG8G12150 Aethionema arabicum HOM05D003082 ORTHO05D003497 5.8e-19 97.8 118 50.0
BcaB01g01292 Brassica carinata HOM05D003082 ORTHO05D003497 7.6e-19 97.4 107 61.7
MELO3C025123.2 Cucumis melo HOM05D003082 ORTHO05D003497 7.6e-19 97.4 115 48.7
TWI15G0329 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 9.9e-19 97.1 118 49.2
Phvul.004G141100 Phaseolus vulgaris HOM05D003082 ORTHO05D003497 1.3e-18 96.7 118 52.5
Gohir.A10G167800 Gossypium hirsutum HOM05D003082 ORTHO05D003497 2.2e-18 95.9 115 64.3
Manes.06G016100 Manihot esculenta HOM05D003082 ORTHO05D003497 2.2e-18 95.9 121 52.1
CANSAT01G2338 Cannabis sativa HOM05D003082 ORTHO05D003497 3.8e-18 95.1 117 47.9
CiPaw.06G015400 Carya illinoinensis HOM05D003082 ORTHO05D003497 4.9e-18 94.7 116 46.6
Oeu053940.1 Olea europaea HOM05D003082 ORTHO05D003497 4.9e-18 94.7 116 48.3
COL.COLO4_34689 Corchorus olitorius HOM05D003082 ORTHO05D003497 6.4e-18 94.4 114 50.0
Aqoxy5G04053 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 1.1e-17 93.6 116 44.8
CsaV3_5G024250 Cucumis sativus L. HOM05D003082 ORTHO05D003497 1.9e-17 92.8 115 46.1
MSTRG.13183 Avicennia marina HOM05D003082 ORTHO05D003497 3.2e-17 92.0 118 47.5
Prupe.5G027300 Prunus persica HOM05D003082 ORTHO05D003497 4.2e-17 91.7 115 53.9
arahy.Tifrunner.gnm1.ann1.TD12MZ Arachis hypogaea HOM05D003082 ORTHO05D003497 5.4e-17 91.3 119 61.3
Eucgr.F02897 Eucalyptus grandis HOM05D003082 ORTHO05D003497 5.4e-17 91.3 116 60.3
Sed0014317 Sechium edule HOM05D003082 ORTHO05D003497 5.4e-17 91.3 115 46.1
Hma1.2p1_0127F.1_g059670 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 7.1e-17 90.9 113 47.8
MD06G1026500 Malus domestica HOM05D003082 ORTHO05D003497 7.1e-17 90.9 119 58.8
Potri.017G138300 Populus trichocarpa HOM05D003082 ORTHO05D003497 7.1e-17 90.9 117 46.2
Medtr6g478160 Medicago truncatula HOM05D003082 ORTHO05D003497 9.3e-17 90.5 120 61.7
Thhalv10019428m.g Eutrema salsugineum HOM05D003082 ORTHO05D003497 1.2e-16 90.1 117 63.2
TAR374G0282 Trochodendron aralioides HOM05D003082 ORTHO05D003497 1.6e-16 89.7 118 44.9
arahy.Tifrunner.gnm1.ann1.W7Y30R Arachis hypogaea HOM05D003082 ORTHO05D003497 2.7e-16 89.0 121 62.0
RcHm_v2.0_Chr7g0211981 Rosa chinensis HOM05D003082 ORTHO05D003497 2.7e-16 89.0 118 60.2
Ca_11830_v3 Cicer arietinum L. HOM05D003082 ORTHO05D003497 3.5e-16 88.6 117 51.3
Gorai.011G194600 Gossypium raimondii HOM05D003082 ORTHO05D003497 3.5e-16 88.6 115 62.6
Lalb_Chr14g0370291 Lupinus albus HOM05D003082 ORTHO05D003497 3.5e-16 88.6 113 50.4
Dinv20511 Davidia involucrata HOM05D003082 ORTHO05D003497 6.0e-16 87.8 117 43.6
Dinv20531 Davidia involucrata HOM05D003082 ORTHO05D003497 6.0e-16 87.8 117 43.6
ECA238G3678 Erigeron canadensis HOM05D003082 ORTHO05D003497 6.0e-16 87.8 117 48.7
Hma1.2p1_0331F.1_g127550 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 6.0e-16 87.8 112 45.5
Sc14g0006870 Simmondsia chinensis HOM05D003082 ORTHO05D003497 6.0e-16 87.8 115 49.6
Duzib212G0528 Durio zibethinus HOM05D003082 ORTHO05D003497 7.9e-16 87.4 115 55.7
PGR042G1487 Punica granatum HOM05D003082 ORTHO05D003497 7.9e-16 87.4 120 53.3
TAR622G0065 Trochodendron aralioides HOM05D003082 ORTHO05D003497 1.3e-15 86.7 116 42.2
GSVIVG01000052001 Vitis vinifera HOM05D003082 ORTHO05D003497 1.3e-15 86.7 115 52.2
MSTRG.15930 Avicennia marina HOM05D003082 ORTHO05D003497 1.8e-15 86.3 117 50.4
DCAR_019930 Daucus carota HOM05D003082 ORTHO05D003497 1.8e-15 86.3 119 47.9
TPR.G19886 Trifolium pratense HOM05D003082 ORTHO05D003497 1.8e-15 86.3 120 57.5
ClCG01G008760 Citrullus lanatus HOM05D003082 ORTHO05D003497 3.0e-15 85.5 112 47.3
Cc02_g12480 Coffea canephora HOM05D003082 ORTHO05D003497 3.0e-15 85.5 116 44.8
PSO170G2980 Papaver somniferum HOM05D003082 ORTHO05D003497 3.0e-15 85.5 120 48.3
Atru.chr9.1638 Acer truncatum HOM05D003082 ORTHO05D003497 3.9e-15 85.1 115 47.0
FAN04G2030 Fragaria x ananassa HOM05D003082 ORTHO05D003497 3.9e-15 85.1 117 59.8
Duzib052G0144 Durio zibethinus HOM05D003082 ORTHO05D003497 5.1e-15 84.7 115 42.6
FvH4_5g23100 Fragaria vesca HOM05D003082 ORTHO05D003497 5.1e-15 84.7 118 55.9
FAN08G1589 Fragaria x ananassa HOM05D003082 ORTHO05D003497 5.1e-15 84.7 118 58.5
FAN18G1653 Fragaria x ananassa HOM05D003082 ORTHO05D003497 5.1e-15 84.7 118 55.9
FAN18G4367 Fragaria x ananassa HOM05D003082 ORTHO05D003497 5.1e-15 84.7 118 55.9
Nitab4.5_0009301g0020 Nicotiana tabacum HOM05D003082 ORTHO05D003497 5.1e-15 84.7 112 50.9
Nitab4.5_0003574g0100 Nicotiana tabacum HOM05D003082 ORTHO05D003497 6.7e-15 84.3 112 43.8
Gohir.D10G173900 Gossypium hirsutum HOM05D003082 ORTHO05D003497 8.7e-15 84.0 115 62.6
Lj3A832G16 Lonicera japonica HOM05D003082 ORTHO05D003497 8.7e-15 84.0 108 50.0
TWI81G0860 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 8.7e-15 84.0 116 46.6
Gohir.A09G236200 Gossypium hirsutum HOM05D003082 ORTHO05D003497 1.1e-14 83.6 116 51.7
MD16G1279500 Malus domestica HOM05D003082 ORTHO05D003497 1.1e-14 83.6 118 56.8
QL02p059987 Quercus lobata HOM05D003082 ORTHO05D003497 1.1e-14 83.6 150 36.0
Nn7g36916 Nelumbo nucifera HOM05D003082 ORTHO05D003497 1.5e-14 83.2 116 45.7
Peaxi162Scf00588g01011 Petunia axillaris HOM05D003082 ORTHO05D003497 1.5e-14 83.2 116 44.0
Nitab4.5_0000190g0170 Nicotiana tabacum HOM05D003082 ORTHO05D003497 1.9e-14 82.8 112 43.8
Oeu043695.1 Olea europaea HOM05D003082 ORTHO05D003497 1.9e-14 82.8 111 45.0
PSO063G3459 Papaver somniferum HOM05D003082 ORTHO05D003497 2.5e-14 82.4 120 47.5
Aqoxy3G02868 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 3.3e-14 82.0 120 42.5
Actinidia01599 Actinidia chinensis HOM05D003082 ORTHO05D003497 5.6e-14 81.3 115 40.0
Haze_00671 Corylus avellana HOM05D003082 ORTHO05D003497 5.6e-14 81.3 114 49.1
Sed0024856 Sechium edule HOM05D003082 ORTHO05D003497 5.6e-14 81.3 116 42.2
FAN13G0663 Fragaria x ananassa HOM05D003082 ORTHO05D003497 7.4e-14 80.9 118 52.5
FAN13G1153 Fragaria x ananassa HOM05D003082 ORTHO05D003497 7.4e-14 80.9 118 52.5
Nitab4.5_0012269g0010 Nicotiana tabacum HOM05D003082 ORTHO05D003497 7.4e-14 80.9 112 46.4
PGSC0003DMG400022359 Solanum tuberosum HOM05D003082 ORTHO05D003497 7.4e-14 80.9 112 42.9
Ah.03g147370 Amaranthus hybridus HOM05D003082 ORTHO05D003497 9.6e-14 80.5 118 41.5
HanXRQChr14g0432091 Helianthus annuus HOM05D003082 ORTHO05D003497 1.6e-13 79.7 116 47.4
DCAR_009639 Daucus carota HOM05D003082 ORTHO05D003497 2.1e-13 79.3 104 61.5
BcaB05g24381 Brassica carinata HOM05D003082 ORTHO05D003497 3.7e-13 78.6 111 49.5
Duzib151G0431 Durio zibethinus HOM05D003082 ORTHO05D003497 3.7e-13 78.6 115 60.0
Nitab4.5_0003465g0050 Nicotiana tabacum HOM05D003082 ORTHO05D003497 3.7e-13 78.6 109 45.9
CSS0043531 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 4.8e-13 78.2 115 40.0
Migut.M01208 Erythranthe guttata HOM05D003082 ORTHO05D003497 4.8e-13 78.2 116 41.4
Thecc.04G291800 Theobroma cacao HOM05D003082 ORTHO05D003497 6.2e-13 77.8 115 53.0
Nn2g12687 Nelumbo nucifera HOM05D003082 ORTHO05D003497 8.1e-13 77.4 116 43.1
Lsat_1_v5_gn_2_38821 Lactuca sativa HOM05D003082 ORTHO05D003497 1.1e-12 77.0 111 50.5
MSTRG.7294 Avicennia marina HOM05D003082 ORTHO05D003497 1.8e-12 76.3 118 41.5
Haze_14301 Corylus avellana HOM05D003082 ORTHO05D003497 1.8e-12 76.3 109 41.3
MBI03_g35442_MAGBIO Magnolia biondii HOM05D003082 ORTHO05D003497 3.1e-12 75.5 121 44.6
Psat1g121400 Pisum sativum HOM05D003082 ORTHO05D003497 4.0e-12 75.1 120 51.7
SGA_v2.0_scaffold7G03956 Striga asiatica HOM05D003082 ORTHO05D003497 4.0e-12 75.1 175 33.7
unitig_46.g18626 Utricularia gibba HOM05D003082 ORTHO05D003497 5.3e-12 74.7 116 40.5
Zm00001eb208430 Zea mays HOM05D003082 ORTHO05D003497 2.0e-11 72.8 118 40.7
Solyc02g079060.3 Solanum lycopersicum HOM05D003082 ORTHO05D003497 3.4e-11 72.0 123 45.5
CDE07G0767 Ceratophyllum demersum HOM05D003082 ORTHO05D003497 5.8e-11 71.2 121 44.6
Hund04328 Selenicereus undatus HOM05D003082 ORTHO05D003497 2.2e-10 69.3 106 46.2
Zm00001eb230510 Zea mays HOM05D003082 ORTHO05D003497 2.2e-10 69.3 123 44.7
Peaxi162Scf00299g00531 Petunia axillaris HOM05D003082 ORTHO05D003497 2.9e-10 68.9 109 44.0
TAR371G0008 Trochodendron aralioides HOM05D003082 ORTHO05D003497 6.4e-10 67.8 112 38.4
PSO384G2055 Papaver somniferum HOM05D003082 ORTHO05D003497 1.1e-09 67.0 117 41.0
EL10Ac6g15380 Beta vulgaris HOM05D003082 ORTHO05D003497 1.4e-09 66.6 123 44.7
Sopen02g023870 Solanum pennellii HOM05D003082 ORTHO05D003497 1.9e-09 66.2 120 46.7
HPP92_018911 Vanilla planifolia HOM05D003082 ORTHO05D003497 1.9e-09 66.2 122 51.6
ATR0743G023 Amborella trichopoda HOM05D003082 ORTHO05D003497 2.4e-09 65.9 114 36.8
CSS0037921 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 2.4e-09 65.9 128 35.9
Pp3c4_20470 Physcomitrium patens HOM05D003082 ORTHO05D003497 3.2e-09 65.5 117 37.6
Os02g0122300 Oryza sativa ssp. japonica HOM05D003082 ORTHO05D003497 4.2e-09 65.1 121 41.3
QL07p034910 Quercus lobata HOM05D003082 ORTHO05D003497 5.5e-09 64.7 91 41.8
Lalb_Chr24g0398531 Lupinus albus HOM05D003082 ORTHO05D003497 7.1e-09 64.3 116 43.1
Oeu038230.1 Olea europaea HOM05D003082 ORTHO05D003497 7.1e-09 64.3 42 73.8
PSO135G0099 Papaver somniferum HOM05D003082 ORTHO05D003497 9.3e-09 63.9 122 45.1
SGA_v2.0_scaffold114G31974 Striga asiatica HOM05D003082 ORTHO05D003497 1.2e-08 63.5 112 59.8
CSS0011396 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 1.8e-07 59.7 109 34.9
CSS0020472 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 1.8e-07 59.7 109 34.9
AUR62007100 Chenopodium quinoa HOM05D003082 ORTHO05D003497 3.0e-07 58.9 114 37.7
Gorai.006G260000 Gossypium raimondii HOM05D003082 ORTHO05D003497 3.9e-07 58.5 40 67.5
Sabra17G0115000 Salix brachista HOM05D003082 ORTHO05D003497 8.7e-07 57.4 41 65.9
Pp3c13_8920 Physcomitrium patens HOM05D003082 ORTHO05D003497 1.1e-06 57.0 116 39.7
SMO228G0136 Selaginella moellendorffii HOM05D003082 ORTHO05D003497 1.1e-06 57.0 104 51.0
AUR62019963 Chenopodium quinoa HOM05D003082 ORTHO05D003497 1.5e-06 56.6 37 70.3
Lj6P692T22 Lonicera japonica HOM05D003082 ORTHO05D003497 1.9e-06 56.2 35 71.4
AagrBONN_evm.TU.Sc2ySwM_228.3198 Anthoceros agrestis HOM05D003082 ORTHO05D003497 4.3e-06 55.1 105 48.6
Actinidia28791 Actinidia chinensis HOM05D003082 ORTHO05D003497 5.6e-06 54.7 102 44.1
Sabra17G0112800 Salix brachista HOM05D003082 ORTHO05D003497 9.6e-06 53.9 41 61.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 9.6e-06 53.9 36 66.7


User provided reference genes

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