Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-208 729.9 431 100.0
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 6.7e-206 720.7 433 99.5
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 6.7e-206 720.7 433 99.5
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.7e-196 689.5 438 95.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 5.9e-194 681.0 435 95.4
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 2.3e-182 642.5 416 92.3
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 4.5e-178 628.2 416 90.9
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 5.7e-173 611.3 436 86.2
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 2.8e-172 609.0 434 86.2
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 2.8e-172 609.0 434 86.2
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.3e-171 604.7 434 85.9
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 7.0e-171 604.4 438 85.4
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 2.7e-170 602.4 437 85.4
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 3.5e-170 602.1 437 86.7
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 2.1e-167 592.8 432 84.0
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 3.0e-166 589.0 397 89.2
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 3.1e-163 578.9 397 88.9
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.6e-159 566.6 441 81.4
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 2.4e-147 526.2 346 91.9
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 4.0e-142 508.8 413 78.7
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 1.1e-118 431.0 445 65.6
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.4e-118 430.6 452 64.6
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 6.9e-118 428.3 452 65.3
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.2e-117 427.6 445 63.6
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 9.9e-117 424.5 443 65.0
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 3.2e-115 419.5 453 62.3
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.1e-114 416.8 376 72.3
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 3.5e-114 416.0 457 63.2
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.5e-112 409.8 368 72.6
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 5.6e-112 408.7 373 71.6
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 5.6e-112 408.7 371 72.0
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 7.3e-112 408.3 355 74.1
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 7.3e-112 408.3 453 62.9
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 2.8e-111 406.4 451 62.7
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 3.6e-111 406.0 419 66.3
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 8.1e-111 404.8 355 73.5
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.4e-110 404.1 368 69.8
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.4e-110 404.1 378 69.6
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.1e-110 402.9 369 70.7
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 6.9e-110 401.7 373 70.8
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 2.0e-109 400.2 374 70.1
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 6.4e-108 395.2 384 66.7
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 1.1e-107 394.4 366 69.9
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 1.4e-107 394.0 374 68.4
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 1.4e-107 394.0 357 70.0
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 1.9e-107 393.7 383 67.4
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 3.2e-107 392.9 371 69.8
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 4.2e-107 392.5 450 60.2
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 4.2e-107 392.5 357 69.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 9.3e-107 391.3 357 69.5
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 1.6e-106 390.6 356 69.4
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 1.6e-106 390.6 368 69.0
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 2.1e-106 390.2 401 65.8
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 2.7e-106 389.8 358 69.6
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 2.7e-106 389.8 376 68.4
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.0e-105 387.9 328 75.6
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.3e-105 387.5 358 69.0
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.0e-105 386.3 355 68.5
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 3.9e-105 386.0 414 61.1
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 6.7e-105 385.2 360 69.7
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 8.7e-105 384.8 416 63.9
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.5e-104 384.0 365 68.8
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.9e-104 383.6 356 69.9
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.5e-104 383.3 381 67.5
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 3.3e-104 382.9 379 67.3
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 5.6e-104 382.1 318 73.9
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 7.4e-104 381.7 381 67.5
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 2.8e-103 379.8 355 69.6
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.8e-103 379.0 374 67.1
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 4.8e-103 379.0 377 64.2
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 6.2e-103 378.6 460 58.9
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 8.1e-103 378.3 301 77.4
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.4e-102 377.5 422 62.1
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 1.4e-102 377.5 426 57.5
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 2.4e-102 376.7 329 71.7
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 4.5e-101 372.5 372 67.5
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 2.2e-100 370.2 300 76.0
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 3.8e-100 369.4 446 57.4
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 9.3e-99 364.8 307 73.9
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 1.2e-98 364.4 368 66.0
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 3.0e-97 359.8 330 69.4
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 8.7e-97 358.2 320 70.6
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 9.6e-96 354.8 375 64.5
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 3.7e-95 352.8 366 63.4
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 6.2e-95 352.1 368 63.3
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 4.0e-94 349.4 403 64.0
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.2e-93 347.8 358 65.6
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 1.2e-93 347.8 242 77.7
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.5e-93 347.4 291 67.4
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.3e-92 344.4 312 70.8
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 2.2e-92 343.6 354 64.7
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 2.2e-92 343.6 362 63.0
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 4.2e-91 339.3 359 63.8
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 4.2e-91 339.3 307 70.4
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 5.5e-91 339.0 407 58.5
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 3.5e-90 336.3 310 68.7
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 6.3e-87 325.5 295 72.2
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 7.7e-85 318.5 242 70.7
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 1.6e-82 310.8 353 63.7
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 5.3e-78 295.8 262 73.3
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 3.4e-77 293.1 359 58.8
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 6.5e-76 288.9 313 64.2
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 2.1e-74 283.9 359 57.7
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.1e-64 251.5 182 76.4
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 2.4e-62 243.8 229 65.1
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.3e-60 238.0 151 82.8
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 2.7e-53 213.8 326 47.5
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 7.2e-51 205.7 308 47.1
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.0e-49 201.8 318 49.1
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.7e-47 193.4 238 47.5
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 6.3e-47 192.6 272 56.2
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 4.5e-45 186.4 117 84.6
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.0e-44 185.3 226 48.2
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 3.6e-42 176.8 273 54.9
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 2.7e-37 160.6 178 64.6
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 3.5e-37 160.2 253 39.1
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.9e-35 154.5 111 74.8
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 5.2e-33 146.4 205 43.4
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 4.6e-29 133.3 242 52.5
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.1e-27 128.6 78 88.5
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 8.9e-17 92.4 61 78.7
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 4.4e-16 90.1 152 51.3
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.6e-10 71.6 101 48.5


User provided reference genes

Program Settings