Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 4.7e-230 800.8 401 100.0
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 7.8e-225 783.5 401 98.3
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.5e-223 779.2 401 97.5
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 4.0e-221 771.2 401 96.3
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.2e-220 769.6 401 97.0
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 1.2e-217 759.6 401 95.3
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 4.3e-207 724.5 401 90.8
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 1.3e-206 723.0 396 91.4
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.4e-205 718.8 396 90.2
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 9.0e-205 716.8 396 89.6
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.6e-201 706.1 401 88.8
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 2.1e-201 705.7 396 88.6
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 6.5e-187 657.5 396 83.3
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 3.1e-181 638.6 393 80.2
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.8e-165 586.3 391 74.7
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 1.7e-163 579.7 391 72.9
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.2e-161 573.5 394 72.8
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.7e-161 571.6 394 72.8
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.3e-160 569.3 394 71.8
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 3.3e-159 565.5 391 72.4
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 2.8e-158 562.4 395 68.9
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 8.2e-158 560.8 394 71.3
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 9.1e-157 557.4 391 70.8
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.3e-155 553.5 395 70.6
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 1.3e-155 553.5 391 70.8
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.3e-155 553.5 391 70.6
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 2.2e-155 552.7 394 69.8
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 2.9e-155 552.4 391 71.9
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 5.0e-155 551.6 394 70.6
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.5e-154 550.1 396 67.2
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.2e-153 547.0 394 68.8
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 1.4e-152 543.5 391 70.6
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 3.0e-152 542.3 420 66.9
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 5.2e-152 541.6 394 68.8
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 5.2e-152 541.6 395 67.6
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 1.5e-151 540.0 419 66.8
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 2.6e-151 539.3 394 68.8
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 3.4e-151 538.9 394 69.0
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 4.4e-151 538.5 394 68.0
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 7.5e-151 537.7 395 67.3
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 7.5e-151 537.7 395 68.6
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 9.8e-151 537.3 396 67.2
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.7e-150 536.6 381 70.9
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 1.1e-149 533.9 410 66.3
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 5.4e-149 531.6 451 61.9
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 5.4e-149 531.6 398 67.1
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.6e-148 530.0 422 63.7
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 2.0e-148 529.6 394 66.2
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 2.0e-148 529.6 394 66.5
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 4.5e-148 528.5 391 67.8
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 5.9e-148 528.1 391 67.8
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 3.8e-147 525.4 389 66.6
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 5.0e-147 525.0 396 66.9
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 5.0e-147 525.0 472 59.3
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 1.5e-146 523.5 393 67.7
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 2.1e-145 519.6 394 66.2
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 6.1e-145 518.1 394 65.7
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 4.0e-144 515.4 391 65.7
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 2.0e-143 513.1 391 66.0
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 1.7e-142 510.0 396 63.9
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.8e-141 506.5 393 63.6
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 9.2e-141 504.2 395 64.8
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 3.5e-140 502.3 359 71.3
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 5.9e-140 501.5 399 64.2
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 1.7e-139 500.0 394 63.7
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.7e-139 500.0 394 63.2
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 1.9e-138 496.5 404 62.9
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 4.3e-138 495.4 393 62.8
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 7.3e-138 494.6 409 60.6
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.6e-137 493.4 395 62.0
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.4e-136 490.3 396 63.6
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.3e-136 489.6 428 60.3
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 8.9e-136 487.6 426 59.9
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 8.9e-136 487.6 368 66.0
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 5.7e-135 485.0 390 61.3
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 7.0e-133 478.0 381 63.3
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 7.8e-132 474.6 393 61.1
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 1.3e-131 473.8 393 60.8
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 3.7e-126 455.7 333 67.9
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 6.4e-126 454.9 360 65.0
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 4.1e-125 452.2 395 58.0
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 7.0e-125 451.4 506 50.6
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 7.3e-122 441.4 390 58.2
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.5e-119 433.7 384 59.4
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 2.6e-119 433.0 445 55.1
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 4.1e-117 425.6 435 54.9
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 2.8e-113 412.9 351 58.1
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 3.1e-112 409.5 399 54.4
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 7.3e-106 388.3 392 53.6
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 9.6e-106 387.9 316 60.4
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 2.6e-103 379.8 286 66.1
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 3.2e-101 372.9 275 66.5
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.5e-100 369.4 297 64.6
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 6.0e-100 368.6 402 51.5
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.4e-96 356.7 399 46.9
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 2.0e-95 353.6 405 45.4
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.8e-91 340.5 397 45.8
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.9e-90 337.0 249 69.9
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 6.9e-88 328.6 305 55.7
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 2.4e-85 320.1 238 69.3
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.1e-81 307.0 223 67.7
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 2.5e-77 293.5 486 36.8
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 4.3e-74 282.7 242 60.3
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 6.3e-73 278.9 370 41.4
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 7.2e-69 265.4 317 43.2
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 1.5e-66 257.7 202 65.3
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 7.4e-58 228.8 139 77.0
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 9.1e-40 168.7 535 26.5
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 5.0e-38 162.9 139 64.0
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-37 161.0 119 68.1
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-37 161.0 119 68.1
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-37 161.0 119 68.1
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.2e-37 160.2 119 68.1
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.2e-37 159.8 119 67.2
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.2e-37 159.8 119 67.2
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.0e-35 153.3 103 70.9
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.4e-34 149.8 103 68.9
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 4.4e-34 149.8 109 67.0
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.7e-34 149.4 100 72.0
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 7.7e-31 139.0 104 60.6
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 7.7e-31 139.0 80 82.5
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 1.9e-29 134.4 174 43.7
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.8e-28 130.6 81 75.3
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 6.8e-27 125.9 79 73.4
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.0e-26 124.4 70 81.4
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-23 114.8 65 81.5
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.6e-23 114.8 65 81.5
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.5e-23 113.2 65 80.0
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 5.9e-23 112.8 109 56.0
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 1.3e-22 111.7 113 50.4
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.3e-21 106.7 65 78.5
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 1.2e-20 105.1 254 33.9
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.8e-20 104.0 65 75.4
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.4e-18 96.7 109 47.7
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 7.5e-18 95.9 71 60.6
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 3.7e-17 93.6 69 63.8
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 4.9e-17 93.2 162 41.4
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.1e-16 90.1 60 71.7
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 4.3e-13 80.1 54 70.4
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 1.6e-12 78.2 97 40.2
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 1.1e-11 75.5 65 60.0
AL2G24330 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 1.3e-09 68.6 34 91.2
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 8.3e-09 65.9 43 69.8
TPR.G3472 Trifolium pratense HOM05D002536 ORTHO05D000008 2.7e-07 60.8 32 84.4


User provided reference genes

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