Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.4e-125 453.0 230 100.0
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 9.0e-125 450.3 230 99.6
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 4.5e-124 448.0 230 99.1
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 7.9e-121 437.2 228 97.8
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.3e-120 435.6 230 95.7
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 5.1e-120 434.5 228 97.4
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.8e-117 426.0 227 95.2
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.4e-117 425.6 227 95.2
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-117 424.9 227 95.2
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 4.0e-117 424.9 227 96.5
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 2.6e-116 422.2 230 94.3
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.0e-115 420.2 227 94.7
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 4.9e-115 417.9 227 94.3
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.1e-114 416.8 227 93.8
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.9e-114 416.0 227 94.3
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 5.9e-108 394.4 209 95.2
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 3.8e-107 391.7 224 87.9
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 6.5e-107 391.0 224 87.9
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 6.5e-107 391.0 224 87.9
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 6.5e-107 391.0 224 88.4
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 8.5e-107 390.6 224 87.5
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 7.2e-106 387.5 222 88.3
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 7.2e-106 387.5 224 87.1
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 9.4e-106 387.1 212 93.9
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 9.4e-106 387.1 212 93.9
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 7.9e-105 384.0 224 87.1
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-104 383.3 207 94.7
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 1.1e-98 363.6 228 81.6
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.9e-98 362.8 206 88.3
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.0e-96 357.1 227 78.0
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-96 356.7 205 87.8
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.8e-96 356.3 227 77.5
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 2.8e-94 349.0 230 75.2
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 4.8e-94 348.2 224 77.7
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 8.2e-94 347.4 219 77.2
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 8.2e-94 347.4 224 78.1
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 3.1e-93 345.5 222 75.7
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 5.3e-93 344.7 223 77.1
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 5.3e-93 344.7 223 74.9
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 7.0e-93 344.4 228 74.1
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 9.1e-93 344.0 219 78.5
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 1.2e-92 343.6 220 77.7
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.2e-92 343.6 224 74.6
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 2.0e-92 342.8 225 75.6
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 2.6e-92 342.4 225 76.0
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 3.5e-92 342.0 224 73.7
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 5.9e-92 341.3 223 73.5
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.9e-92 341.3 223 73.5
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 5.9e-92 341.3 228 73.2
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 1.3e-91 340.1 225 74.7
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.3e-91 340.1 228 73.7
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.3e-91 340.1 225 74.2
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.7e-91 339.7 223 73.1
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.7e-91 339.7 224 73.2
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.7e-91 339.7 222 74.8
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.2e-91 339.3 225 72.9
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 2.9e-91 339.0 222 73.4
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 2.9e-91 339.0 225 72.9
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.8e-91 338.6 225 74.7
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 3.8e-91 338.6 225 72.4
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.5e-91 337.4 223 72.6
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.4e-90 336.7 225 74.2
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.4e-90 336.7 223 71.3
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 2.5e-90 335.9 219 75.3
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.5e-90 335.9 214 75.2
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.2e-90 335.5 215 76.7
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 4.2e-90 335.1 224 73.7
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 4.2e-90 335.1 225 72.4
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 7.2e-90 334.3 221 74.7
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 1.6e-89 333.2 219 75.3
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 3.6e-89 332.0 220 73.6
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 3.6e-89 332.0 222 73.4
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.6e-89 332.0 221 73.8
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.4e-88 330.1 221 73.3
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.8e-88 329.7 224 73.2
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.8e-88 329.7 220 74.1
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 3.0e-88 328.9 220 73.6
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 5.2e-88 328.2 222 73.4
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.5e-87 326.6 222 72.1
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 2.0e-87 326.2 222 70.7
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 4.4e-87 325.1 219 74.0
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.2e-86 322.8 222 71.6
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.2e-86 322.8 224 70.5
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 6.3e-86 321.2 221 70.1
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.1e-85 320.5 221 72.4
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.4e-85 320.1 223 70.9
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.8e-85 319.7 214 70.6
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 2.4e-85 319.3 221 70.1
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.1e-85 318.9 223 70.4
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 4.1e-85 318.5 221 71.0
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 4.1e-85 318.5 221 69.2
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 5.3e-85 318.2 238 68.9
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 7.0e-85 317.8 217 71.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 9.1e-85 317.4 227 68.3
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.2e-84 317.0 221 70.1
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.2e-84 317.0 221 70.1
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.2e-84 317.0 221 71.5
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.2e-84 317.0 214 72.4
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.6e-84 316.6 214 71.0
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.6e-84 315.8 214 71.5
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 4.5e-84 315.1 205 73.7
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 7.7e-84 314.3 218 70.6
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 7.7e-84 314.3 223 69.1
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.3e-83 313.5 223 68.6
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.3e-83 313.5 223 68.6
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 3.8e-83 312.0 208 70.7
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 2.5e-82 309.3 203 74.9
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 3.2e-82 308.9 205 72.2
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 9.4e-82 307.4 224 68.3
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-81 307.0 223 67.3
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 1.2e-81 307.0 205 75.1
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.6e-81 306.6 223 67.3
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.7e-81 305.8 211 70.1
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 4.7e-81 305.1 222 68.9
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 5.2e-80 301.6 215 67.9
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.2e-79 300.4 204 71.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 4.4e-79 298.5 232 65.9
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.3e-78 297.0 223 67.3
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.2e-78 296.2 259 59.5
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 6.3e-78 294.7 203 71.9
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.1e-77 293.9 207 69.6
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.4e-77 293.5 205 70.7
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 5.3e-77 291.6 221 65.2
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.8e-75 285.4 207 74.4
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 8.5e-75 284.3 212 65.6
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 1.2e-73 280.4 213 64.3
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 2.1e-73 279.6 202 67.8
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 4.7e-73 278.5 240 59.2
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 5.2e-72 275.0 206 66.5
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 2.0e-71 273.1 205 67.8
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 6.3e-70 268.1 213 63.8
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 1.1e-69 267.3 186 72.0
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-69 266.9 160 85.6
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.4e-69 266.9 215 65.1
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 5.4e-69 265.0 176 74.4
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.0e-69 264.6 214 64.5
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 8.6e-67 257.7 211 63.0
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 8.6e-67 257.7 183 79.2
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.5e-66 256.9 225 59.6
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 1.5e-63 246.9 204 61.3
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 4.4e-63 245.4 225 56.4
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.2e-62 243.0 231 58.4
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 5.4e-61 238.4 220 57.3
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 7.0e-61 238.0 159 75.5
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 2.0e-60 236.5 153 78.4
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 3.5e-60 235.7 215 58.1
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.9e-58 229.9 180 66.1
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 2.8e-57 226.1 213 55.9
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 6.1e-57 224.9 222 53.6
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 5.2e-56 221.9 215 57.2
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 5.2e-56 221.9 226 53.5
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 9.8e-55 217.6 186 64.0
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.7e-54 215.7 226 51.8
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.5e-50 203.0 223 51.1
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 6.2e-49 198.4 219 59.4
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 1.4e-48 197.2 115 89.6
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 4.0e-48 195.7 215 49.3
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 4.6e-44 182.2 107 85.0
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.2e-41 174.1 240 46.2
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 2.6e-39 166.4 117 80.3
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 2.3e-35 153.3 216 44.0
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.0e-35 152.9 112 66.1
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 6.6e-35 151.8 240 40.4
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 3.3e-34 149.4 99 73.7
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.8e-32 143.7 220 41.4
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.6e-28 129.0 131 53.4
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.6e-25 120.6 157 43.9
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.1e-24 117.9 78 73.1
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 1.7e-19 100.5 76 60.5
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 4.8e-17 92.4 80 57.5
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.7e-14 84.0 204 31.4
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.9e-12 75.1 70 52.9
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 5.1e-11 72.4 105 41.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 6.9e-08 62.0 40 62.5
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 1.3e-06 57.8 73 47.9
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 3.8e-06 56.2 69 50.7


User provided reference genes

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