Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 5.7e-219 764.2 465 100.0
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 6.1e-213 744.2 465 98.3
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 1.1e-209 733.4 467 97.0
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 2.7e-192 675.6 484 86.4
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 2.7e-192 675.6 484 86.4
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 9.5e-190 667.2 467 89.5
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 7.5e-187 657.5 470 87.9
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 1.3e-186 656.8 470 85.1
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 8.3e-186 654.1 467 88.4
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 4.1e-185 651.7 469 87.6
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 7.3e-182 641.0 466 88.8
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 2.2e-178 629.4 472 86.2
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 1.6e-176 623.2 466 87.3
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 1.5e-174 616.7 480 82.5
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 6.2e-173 611.3 475 82.1
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 3.4e-171 605.5 480 80.8
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 2.5e-150 536.2 424 82.3
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 2.4e-148 529.6 488 72.7
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 9.0e-148 527.7 475 75.4
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 3.1e-124 449.5 478 67.8
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 4.3e-118 429.1 489 60.3
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 2.2e-117 426.8 449 62.6
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 2.8e-117 426.4 465 69.5
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 6.3e-117 425.2 489 64.8
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.1e-116 424.5 421 64.1
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 5.3e-116 422.2 424 65.6
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 6.9e-116 421.8 489 59.5
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 6.9e-116 421.8 454 62.6
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 2.0e-115 420.2 471 60.3
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 2.0e-115 420.2 417 63.5
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 2.0e-115 420.2 429 65.0
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 2.6e-115 419.9 423 66.0
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 4.5e-115 419.1 439 62.6
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 4.5e-115 419.1 426 62.2
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 7.7e-115 418.3 415 68.4
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 1.0e-114 417.9 424 64.4
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.0e-114 417.9 414 68.6
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.7e-114 417.2 415 68.0
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 2.9e-114 416.4 414 67.9
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 2.9e-114 416.4 424 64.4
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 3.8e-114 416.0 483 62.1
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 3.8e-114 416.0 421 64.6
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 3.8e-114 416.0 466 58.4
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.1e-113 414.5 414 65.5
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 1.4e-113 414.1 424 67.5
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 1.9e-113 413.7 427 65.8
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 1.9e-113 413.7 436 64.0
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 2.5e-113 413.3 420 64.5
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 3.2e-113 412.9 489 57.7
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 9.4e-113 411.4 436 63.5
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 1.2e-112 411.0 431 58.2
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 1.6e-112 410.6 426 67.1
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.1e-112 410.2 428 61.9
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 3.6e-112 409.5 484 59.9
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 7.9e-112 408.3 415 65.5
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.0e-111 407.9 467 59.5
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 1.0e-111 407.9 489 58.1
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 3.9e-111 406.0 432 64.8
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.1e-111 405.6 485 60.4
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 6.7e-111 405.2 483 61.1
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 4.3e-110 402.5 432 60.0
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 7.4e-110 401.7 429 66.4
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 1.3e-109 401.0 424 60.8
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 1.7e-109 400.6 503 58.6
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 2.2e-109 400.2 426 63.1
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 3.7e-109 399.4 432 58.1
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 3.7e-109 399.4 428 63.8
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 1.1e-108 397.9 421 61.5
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 2.6e-107 393.3 383 65.0
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 2.6e-107 393.3 424 62.3
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.3e-106 391.0 393 66.2
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 6.5e-106 388.7 495 56.4
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 1.4e-105 387.5 413 64.6
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 2.5e-105 386.7 419 62.5
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 3.2e-105 386.3 432 60.2
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.0e-103 381.3 454 59.3
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 1.8e-103 380.6 382 67.3
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 3.0e-103 379.8 414 64.5
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 9.7e-102 374.8 461 56.8
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 2.2e-101 373.6 432 59.3
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 1.3e-98 364.4 471 53.7
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.7e-98 364.0 384 62.5
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.1e-97 361.3 435 60.2
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 8.0e-96 355.1 444 57.7
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 1.8e-95 354.0 488 52.3
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 2.3e-95 353.6 418 60.3
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 8.2e-93 345.1 662 43.5
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 9.1e-92 341.7 410 63.9
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 7.7e-91 338.6 431 57.8
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 1.5e-89 334.3 347 72.3
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.5e-89 334.3 462 53.9
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.5e-89 334.3 462 53.9
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 6.1e-88 328.9 376 56.9
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 2.2e-85 320.5 379 61.7
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 2.8e-85 320.1 186 89.2
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 1.1e-84 318.2 419 56.1
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.7e-82 310.8 405 51.4
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 5.5e-81 305.8 363 68.6
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 9.4e-81 305.1 410 54.6
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.0e-79 299.7 280 64.3
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 3.4e-78 296.6 286 64.7
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 3.4e-78 296.6 406 50.2
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 1.1e-76 291.6 278 60.8
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 9.2e-76 288.5 296 64.5
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 4.0e-71 273.1 332 63.0
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 3.7e-69 266.5 277 62.5
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 3.5e-67 260.0 286 59.1
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 5.9e-67 259.2 356 52.2
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 5.6e-65 252.7 296 57.4
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 6.2e-64 249.2 408 48.5
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 1.3e-61 241.5 331 57.1
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 3.7e-61 240.0 318 55.0
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.1e-57 228.4 383 45.7
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 4.3e-57 226.5 625 38.1
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 1.9e-41 174.5 518 38.4
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 1.2e-40 171.8 244 61.9
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 2.1e-35 154.5 103 80.6
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 2.6e-30 137.5 87 78.2
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 3.4e-30 137.1 358 31.6
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 7.6e-30 136.0 104 70.2
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.6e-27 128.3 119 63.9
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 3.3e-25 120.6 99 89.9
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 3.6e-24 117.1 194 44.3
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 6.9e-23 112.8 63 79.4
C09p44560 Brassica napus HOM05D041588 ORTHO05D006779 1.5e-22 111.7 104 64.4
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.9e-20 104.8 62 75.8
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 3.2e-20 104.0 101 80.2
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 3.0e-18 97.4 110 69.1
C06p31420 Brassica napus HOM05D005481 ORTHO05D006779 3.9e-18 97.1 97 57.7
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.1e-16 91.3 84 66.7
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 4.0e-15 87.0 66 63.6
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 8.4e-13 79.3 96 53.1
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 4.2e-12 77.0 63 65.1
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 1.3e-10 72.0 108 45.4
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 4.8e-08 63.5 43 72.1
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 2.4e-07 61.2 208 25.5
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.1e-07 60.8 87 43.7


User provided reference genes

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