Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 5.3e-198 694.1 339 100.0
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 3.8e-180 634.8 308 100.0
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 1.3e-159 566.6 311 88.7
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.8e-158 562.8 311 89.1
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.8e-158 562.8 311 89.1
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 8.5e-156 553.9 311 88.1
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 2.5e-155 552.4 311 87.1
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.3e-151 540.0 313 83.7
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 5.2e-145 518.1 312 80.1
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 2.3e-137 492.7 312 77.2
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 5.0e-132 474.9 267 85.4
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 3.0e-129 465.7 312 73.7
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.9e-118 429.9 304 71.4
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 2.0e-112 409.8 320 65.9
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 2.4e-110 402.9 273 74.7
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 5.1e-100 368.6 317 58.4
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 1.9e-99 366.7 315 60.0
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 3.3e-99 365.9 316 59.2
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 6.9e-97 358.2 317 58.7
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.5e-96 357.1 316 57.9
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 3.4e-96 355.9 315 58.7
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 7.6e-96 354.8 315 58.7
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 8.4e-95 351.3 323 56.0
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 1.4e-94 350.5 317 58.0
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 1.4e-94 350.5 316 55.7
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 2.4e-94 349.7 314 57.6
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 3.2e-94 349.4 317 56.8
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 2.1e-93 346.7 318 55.3
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 1.3e-92 344.0 323 55.4
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.7e-92 343.6 316 54.7
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 2.3e-92 343.2 311 56.6
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 5.1e-92 342.0 320 53.1
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 1.1e-91 340.9 316 54.4
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 1.5e-91 340.5 317 54.9
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.9e-91 340.1 315 54.9
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 2.5e-91 339.7 322 55.6
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.3e-91 339.0 316 55.7
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 1.6e-90 337.0 311 56.9
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 8.1e-90 334.7 323 55.4
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 1.4e-89 334.0 315 54.9
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.8e-89 333.6 316 55.4
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 2.4e-89 333.2 321 54.2
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 9.0e-89 331.3 323 54.2
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 9.0e-89 331.3 316 55.1
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.2e-88 330.9 316 55.7
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.5e-88 330.5 324 55.6
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 1.5e-88 330.5 322 54.7
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.4e-88 329.3 316 55.1
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 5.8e-88 328.6 322 53.1
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 9.9e-88 327.8 316 52.8
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.7e-87 327.0 317 52.7
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 3.8e-87 325.9 323 52.3
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 8.4e-87 324.7 326 51.8
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 1.4e-86 323.9 317 52.7
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 1.4e-86 323.9 324 53.4
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 1.9e-86 323.6 322 52.8
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 4.2e-86 322.4 322 52.5
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 4.6e-85 318.9 322 52.5
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 2.3e-84 316.6 335 51.3
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 3.9e-84 315.8 315 52.1
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 8.7e-84 314.7 319 51.4
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 3.3e-83 312.8 319 51.1
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 3.3e-83 312.8 222 67.1
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 5.6e-83 312.0 313 51.1
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 7.4e-83 311.6 319 53.6
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 2.1e-82 310.1 313 51.1
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 2.8e-82 309.7 319 50.8
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 4.8e-82 308.9 312 51.3
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 8.1e-82 308.1 313 52.4
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 8.1e-82 308.1 361 46.8
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.8e-81 307.0 252 60.7
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 3.1e-81 306.2 319 52.7
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 4.0e-81 305.8 332 48.5
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.4e-80 302.8 373 47.7
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 7.1e-78 295.0 318 50.0
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 1.2e-77 294.3 328 48.2
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.7e-77 293.1 274 55.5
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 7.9e-77 291.6 341 47.5
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.0e-76 291.2 331 48.6
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 2.1e-74 283.5 232 60.8
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 1.4e-73 280.8 321 49.2
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 5.3e-73 278.9 323 49.2
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 1.2e-72 277.7 316 47.5
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 1.5e-72 277.3 313 48.2
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.3e-71 274.2 352 44.9
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.0e-68 264.6 310 48.7
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 1.8e-68 263.8 269 51.7
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 5.1e-68 262.3 229 55.0
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 4.1e-65 252.7 270 51.5
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.9e-62 243.8 325 43.1
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 1.9e-62 243.8 282 47.9
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 5.1e-60 235.7 275 45.1
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 3.7e-58 229.6 394 36.3
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 6.3e-58 228.8 215 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 1.1e-54 218.0 249 48.2
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 1.6e-53 214.2 381 38.1
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 4.7e-53 212.6 261 47.9
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 4.8e-50 202.6 290 43.4
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 2.4e-49 200.3 275 44.4
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 3.5e-48 196.4 106 84.0
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.9e-46 190.7 250 44.0
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 3.0e-44 183.3 308 37.3
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 3.0e-44 183.3 159 56.0
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 2.8e-42 176.8 232 45.7
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 4.8e-42 176.0 308 36.7
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 3.5e-40 169.9 224 43.3
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 8.5e-39 165.2 94 77.7
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.6e-37 159.8 111 65.8
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 1.8e-36 157.5 93 73.1
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 9.4e-30 135.2 126 49.2
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 1.6e-29 134.4 166 48.2
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 1.6e-29 134.4 166 48.2
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 2.3e-28 130.6 113 59.3
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.7e-23 114.4 64 75.0
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.9e-22 110.9 68 72.1
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 2.5e-22 110.5 131 47.3
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 7.0e-17 92.4 44 86.4
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 1.2e-16 91.7 60 66.7
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 3.5e-16 90.1 140 42.9
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 7.8e-16 89.0 57 68.4
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 3.9e-15 86.7 94 45.7
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 3.9e-15 86.7 94 45.7
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 1.9e-14 84.3 149 35.6
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 7.3e-14 82.4 49 73.5
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 9.5e-14 82.0 49 71.4
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 2.8e-13 80.5 89 46.1
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 8.0e-13 79.0 219 32.0
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 2.0e-11 74.3 44 68.2
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 1.3e-10 71.6 44 65.9
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 1.9e-06 57.8 84 35.7


User provided reference genes

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