Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 1.1e-87 326.6 166 100.0
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 9.5e-76 287.0 144 99.3
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 9.5e-76 287.0 144 99.3
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 2.8e-75 285.4 144 98.6
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 2.6e-73 278.9 145 97.9
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 1.4e-71 273.1 144 95.1
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 4.1e-71 271.6 144 95.1
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 1.7e-69 266.2 144 94.4
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 5.1e-69 264.6 144 95.1
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 6.6e-69 264.2 144 91.7
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 8.6e-69 263.8 144 92.4
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 1.1e-68 263.5 144 91.7
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 1.9e-68 262.7 144 93.1
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 2.5e-68 262.3 144 92.4
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 9.5e-68 260.4 144 92.4
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 9.5e-68 260.4 144 92.4
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 1.2e-62 243.4 124 97.6
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 5.6e-60 234.6 144 79.9
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 1.4e-58 229.9 124 94.4
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 5.2e-58 228.0 144 77.1
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 1.5e-57 226.5 145 75.9
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 2.0e-57 226.1 124 92.7
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 2.0e-57 226.1 144 75.7
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 5.8e-57 224.6 144 76.4
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 7.6e-57 224.2 144 76.4
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 2.9e-56 222.2 144 75.7
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.9e-56 221.5 144 75.7
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 6.4e-56 221.1 144 75.0
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 8.4e-56 220.7 144 74.3
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 1.4e-55 219.9 145 75.2
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 1.4e-55 219.9 144 75.0
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.4e-55 219.9 144 76.4
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 3.2e-55 218.8 144 74.3
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 3.2e-55 218.8 144 74.3
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.4e-55 218.0 144 74.3
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 5.4e-55 218.0 144 72.9
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 7.1e-55 217.6 144 75.0
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 1.2e-54 216.9 145 75.2
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 1.6e-54 216.5 144 77.1
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 2.7e-54 215.7 145 76.6
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 3.5e-54 215.3 144 75.0
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 3.5e-54 215.3 145 74.5
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.0e-53 213.8 144 73.6
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 1.0e-53 213.8 144 75.0
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 1.7e-53 213.0 145 72.4
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 3.9e-53 211.8 144 75.0
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 3.9e-53 211.8 144 72.9
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 3.9e-53 211.8 144 70.8
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 1.1e-52 210.3 145 75.9
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 1.9e-52 209.5 144 71.5
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 1.9e-52 209.5 145 73.8
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 2.5e-52 209.1 145 74.5
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 2.5e-52 209.1 144 75.0
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 2.5e-52 209.1 144 75.0
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.3e-52 208.8 144 71.5
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 3.3e-52 208.8 144 71.5
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 3.3e-52 208.8 144 72.9
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 3.3e-52 208.8 144 71.5
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 3.3e-52 208.8 144 75.0
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 5.6e-52 208.0 119 89.1
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 7.3e-52 207.6 144 73.6
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 7.3e-52 207.6 143 72.0
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 9.6e-52 207.2 145 73.8
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 9.6e-52 207.2 144 71.5
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 1.3e-51 206.8 144 68.8
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 2.8e-51 205.7 144 69.4
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 2.8e-51 205.7 145 73.1
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 2.8e-51 205.7 144 72.2
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 3.6e-51 205.3 144 70.1
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 3.6e-51 205.3 144 72.9
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 4.8e-51 204.9 144 70.8
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 4.8e-51 204.9 144 72.9
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 6.2e-51 204.5 145 73.1
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 6.2e-51 204.5 144 72.2
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 8.1e-51 204.1 146 73.3
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 1.4e-50 203.4 144 72.2
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 1.8e-50 203.0 144 72.2
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 2.4e-50 202.6 144 72.2
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 5.3e-50 201.4 144 72.9
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 6.9e-50 201.1 145 71.0
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 6.9e-50 201.1 145 70.3
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 9.0e-50 200.7 145 70.3
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 9.0e-50 200.7 145 70.3
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 1.2e-49 200.3 144 68.8
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 1.2e-49 200.3 144 74.3
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 2.0e-49 199.5 142 73.2
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 5.8e-49 198.0 145 69.0
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 5.8e-49 198.0 145 69.0
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 7.6e-49 197.6 168 64.3
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 9.9e-49 197.2 144 70.1
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 9.9e-49 197.2 144 70.1
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 1.3e-48 196.8 144 69.4
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 1.3e-48 196.8 142 71.8
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 1.3e-48 196.8 142 71.8
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 1.3e-48 196.8 142 71.8
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 1.3e-48 196.8 142 71.8
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 1.7e-48 196.4 144 68.1
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 1.7e-48 196.4 145 72.4
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 1.7e-48 196.4 142 71.1
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 1.7e-48 196.4 142 73.2
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 2.2e-48 196.1 147 70.1
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 2.9e-48 195.7 144 69.4
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 3.8e-48 195.3 144 68.8
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 4.9e-48 194.9 142 71.1
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 4.9e-48 194.9 142 72.5
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 4.9e-48 194.9 144 69.4
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 8.4e-48 194.1 125 77.6
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 1.1e-47 193.7 145 67.6
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 1.4e-47 193.4 145 67.6
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 1.9e-47 193.0 145 69.7
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 2.4e-47 192.6 145 69.0
SEGI_01063 Sequoiadendron giganteum HOM05D003846 ORTHO05D004726 3.2e-47 192.2 144 65.3
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 3.2e-47 192.2 145 69.0
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 5.4e-47 191.4 146 67.8
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 9.3e-47 190.7 144 69.4
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 1.2e-46 190.3 123 78.9
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 1.2e-46 190.3 145 71.7
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 2.1e-46 189.5 117 79.5
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 2.1e-46 189.5 145 67.6
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 3.5e-46 188.7 144 66.7
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 3.5e-46 188.7 124 75.0
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 6.0e-46 188.0 145 70.3
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 1.0e-45 187.2 148 62.2
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 1.0e-45 187.2 145 70.3
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 1.3e-45 186.8 130 73.8
Sed0022338 Sechium edule HOM05D003846 ORTHO05D004726 1.7e-45 186.4 145 68.3
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 8.7e-45 184.1 147 63.3
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 1.1e-44 183.7 151 64.2
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 1.5e-44 183.3 144 64.6
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 1.9e-44 183.0 145 64.8
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 1.9e-44 183.0 145 64.8
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 2.5e-44 182.6 105 83.8
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 3.3e-44 182.2 105 84.8
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 7.3e-44 181.0 105 83.8
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 7.3e-44 181.0 138 71.7
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.3e-43 180.3 105 82.9
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 2.8e-43 179.1 96 87.5
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 2.8e-43 179.1 149 63.1
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 4.8e-43 178.3 99 84.8
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 8.1e-43 177.6 99 87.9
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 1.4e-42 176.8 96 85.4
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 1.8e-42 176.4 136 69.9
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 4.0e-42 175.3 132 70.5
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 3.4e-41 172.2 136 67.6
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 7.6e-41 171.0 109 78.9
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 7.6e-41 171.0 147 59.9
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 1.3e-40 170.2 198 50.5
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 3.8e-40 168.7 94 84.0
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 4.9e-40 168.3 126 68.3
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 4.9e-40 168.3 99 81.8
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 2.4e-39 166.0 97 85.6
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 7.1e-39 164.5 99 78.8
Pp3c10_21560 Physcomitrium patens HOM05D003846 ORTHO05D004726 2.1e-38 162.9 95 82.1
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 3.0e-37 159.1 124 62.9
GSVIVG01011936001 Vitis vinifera HOM05D003846 ORTHO05D004726 4.8e-35 151.8 145 58.6
CBR_g40856 Chara braunii HOM05D003846 ORTHO05D004726 3.8e-32 142.1 105 68.6
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 1.4e-31 140.2 149 53.0
Lsat_1_v5_gn_4_145001 Lactuca sativa HOM05D003846 ORTHO05D004726 8.7e-29 131.0 80 81.2
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 1.1e-28 130.6 72 84.7
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 2.8e-27 125.9 103 68.0
DCAR_011545 Daucus carota HOM05D003846 ORTHO05D004726 2.6e-25 119.4 66 86.4
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 1.4e-23 113.6 100 61.0
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 7.1e-23 111.3 85 68.2
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 7.1e-23 111.3 85 68.2
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.2e-22 110.5 67 80.6
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.2e-22 110.5 67 80.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 2.3e-21 106.3 57 87.7
CDE05G0888 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 1.5e-20 103.6 144 43.8
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 1.5e-20 103.6 67 77.6
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 2.4e-18 96.3 89 53.9
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 6.9e-18 94.7 113 42.5
Nn4g23759 Nelumbo nucifera HOM05D003846 ORTHO05D004726 7.7e-17 91.3 74 60.8
Manes.11G040408 Manihot esculenta HOM05D003846 ORTHO05D004726 1.3e-16 90.5 83 55.4
Manes.11G039928 Manihot esculenta HOM05D000085 ORTHO05D250131 1.7e-16 90.1 105 48.6
CsaV3_5G034070 Cucumis sativus L. HOM05D000040 ORTHO05D000759 1.4e-13 80.5 80 53.8
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.8e-11 72.8 123 40.7
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 2.4e-10 69.7 37 83.8
FAN12G0550 Fragaria x ananassa HOM05D003846 ORTHO05D004726 6.9e-10 68.2 57 68.4
Aa31LG6G7310 Aethionema arabicum HOM05D003846 ORTHO05D058653 9.1e-10 67.8 38 86.8
C06p41190 Brassica napus HOM05D003846 ORTHO05D004726 3.4e-09 65.9 40 80.0
Lj6A762T41 Lonicera japonica HOM05D003846 ORTHO05D004726 7.7e-09 64.7 42 73.8


User provided reference genes

Program Settings