Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45940 Brassica carinata HOM05D012012 ORTHO05D013530 3.3e-72 275.0 146 100.0
A07p31830 Brassica napus HOM05D012012 ORTHO05D013530 1.1e-48 196.8 143 77.6
BraA07t30811Z Brassica rapa HOM05D012012 ORTHO05D013530 8.2e-47 190.7 144 73.6
BolC6t38841H Brassica oleracea HOM05D012012 ORTHO05D013530 2.5e-43 179.1 98 99.0
C06p37390 Brassica napus HOM05D012012 ORTHO05D013530 3.2e-43 178.7 98 99.0
BcaC08g45942 Brassica carinata HOM05D012012 ORTHO05D013530 3.8e-28 128.6 99 70.7
C06p37370 Brassica napus HOM05D012012 ORTHO05D013530 3.8e-28 128.6 99 70.7
BolC6t38839H Brassica oleracea HOM05D012012 ORTHO05D013530 5.5e-27 124.8 99 69.7
BcaNung06173 Brassica carinata HOM05D012012 ORTHO05D013530 8.2e-23 110.9 84 67.9
A07p31820 Brassica napus HOM05D012012 ORTHO05D013530 7.7e-21 104.4 80 67.5
BraA07t30809Z Brassica rapa HOM05D012012 ORTHO05D013530 7.7e-21 104.4 80 67.5
BraA03t11947Z Brassica rapa HOM05D012012 ORTHO05D013530 1.0e-20 104.0 85 63.5
BolC6t38842H Brassica oleracea HOM05D012012 ORTHO05D105455 2.7e-18 95.9 47 100.0
Sp4g00800 Schrenkiella parvula HOM05D003095 ORTHO05D003517 8.0e-18 94.4 103 55.3
A09p58070 Brassica napus HOM05D003095 ORTHO05D003517 2.9e-12 75.9 64 54.7
BraA09t41195Z Brassica rapa HOM05D003095 ORTHO05D003517 2.9e-12 75.9 64 54.7
AT2G21640 Arabidopsis thaliana HOM05D003095 ORTHO05D003517 3.8e-12 75.5 92 42.4
Thhalv10000397m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 3.8e-12 75.5 45 71.1
BcaB08g34990 Brassica carinata HOM05D003095 ORTHO05D003517 5.0e-12 75.1 57 57.9
C03p32890 Brassica napus HOM05D012012 ORTHO05D013530 8.5e-12 74.3 43 79.1
C08p41320 Brassica napus HOM05D003095 ORTHO05D003517 1.5e-11 73.6 58 58.6
AL4G10840 Arabidopsis lyrata HOM05D003095 ORTHO05D003517 2.5e-11 72.8 92 43.5
BcaC07g41130 Brassica carinata HOM05D001159 ORTHO05D001712 4.2e-11 72.0 61 54.1
BolC8t51695H Brassica oleracea HOM05D001159 ORTHO05D001712 4.2e-11 72.0 61 54.1
Carub.0004s0067 Capsella rubella HOM05D003095 ORTHO05D003517 2.7e-10 69.3 47 61.7
CARHR112630 Cardamine hirsuta HOM05D003095 ORTHO05D003517 4.4e-08 62.0 89 36.0
Lalb_Chr25g0280921 Lupinus albus HOM05D003095 ORTHO05D003517 2.8e-07 59.3 103 35.9
Aqoxy5G01623 Aquilegia oxysepala HOM05D003095 ORTHO05D003517 6.3e-07 58.2 58 48.3
Glyma.06G309100 Glycine max HOM05D003095 ORTHO05D003517 6.3e-07 58.2 103 36.9
arahy.Tifrunner.gnm1.ann1.86RK4S Arachis hypogaea HOM05D003095 ORTHO05D003517 2.4e-06 56.2 57 47.4
Thhalv10026620m.g Eutrema salsugineum HOM05D003095 ORTHO05D003517 3.1e-06 55.8 89 37.1
arahy.Tifrunner.gnm1.ann1.PX0JLD Arachis hypogaea HOM05D003095 ORTHO05D003517 4.1e-06 55.5 57 47.4
CSS0033942 Camellia sinensis var. sinensis HOM05D003095 ORTHO05D003517 4.1e-06 55.5 102 37.3
Glyma.02G157900 Glycine max HOM05D003095 ORTHO05D003517 5.3e-06 55.1 96 35.4
PSO700G0195 Papaver somniferum HOM05D003095 ORTHO05D003517 5.3e-06 55.1 45 55.6
QL09p041665 Quercus lobata HOM05D003095 ORTHO05D003517 5.3e-06 55.1 65 43.1
MD10G1075100 Malus domestica HOM05D003095 ORTHO05D003517 7.0e-06 54.7 44 59.1
Thecc.01G149400 Theobroma cacao HOM05D003095 ORTHO05D003517 7.0e-06 54.7 58 44.8
Cpa.g.sc62.158 Carica papaya HOM05D003095 ORTHO05D003517 9.1e-06 54.3 58 46.6
Duzib147G0559 Durio zibethinus HOM05D041241 ORTHO05D029106 9.1e-06 54.3 51 45.1


User provided reference genes

Program Settings