Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45902 Brassica carinata HOM05D000094 ORTHO05D039719 4.4e-56 221.1 113 100.0
C06p37080 Brassica napus HOM05D000094 ORTHO05D039719 4.4e-56 221.1 113 100.0
MD17G1060000 Malus domestica HOM05D000094 ORTHO05D002350 1.1e-09 67.0 109 40.4
AL2G28360 Arabidopsis lyrata HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
AT1G69270 Arabidopsis thaliana HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
BcaB03g15886 Brassica carinata HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
BcaB05g24436 Brassica carinata HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
BcaC03g15065 Brassica carinata HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
A02p15770 Brassica napus HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
C02p26220 Brassica napus HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
BolC2t08688H Brassica oleracea HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
BraA02t06638Z Brassica rapa HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
CARHR062140 Cardamine hirsuta HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
Thhalv10018335m.g Eutrema salsugineum HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
Sp5g24330 Schrenkiella parvula HOM05D000094 ORTHO05D002350 9.9e-08 60.5 51 64.7
Aa31LG4G11660 Aethionema arabicum HOM05D000094 ORTHO05D002350 2.2e-07 59.3 51 62.7
Carub.0002s1586 Capsella rubella HOM05D000094 ORTHO05D002350 2.2e-07 59.3 51 62.7
FvH4_4g29970 Fragaria vesca HOM05D000094 ORTHO05D002350 2.2e-07 59.3 51 62.7
FAN07G2398 Fragaria x ananassa HOM05D000094 ORTHO05D002350 2.2e-07 59.3 51 62.7
FAN12G3671 Fragaria x ananassa HOM05D001691 ORTHO05D002350 2.2e-07 59.3 51 62.7
FAN17G1747 Fragaria x ananassa HOM05D000094 ORTHO05D002350 2.2e-07 59.3 51 62.7
FAN22G0879 Fragaria x ananassa HOM05D001691 ORTHO05D002350 2.2e-07 59.3 51 62.7
Gohir.A12G160900 Gossypium hirsutum HOM05D000094 ORTHO05D002350 2.2e-07 59.3 51 62.7
Gohir.D12G164200 Gossypium hirsutum HOM05D000094 ORTHO05D002350 2.2e-07 59.3 51 62.7
Gorai.008G176800 Gossypium raimondii HOM05D000094 ORTHO05D002350 2.2e-07 59.3 51 62.7
RcHm_v2.0_Chr4g0438241 Rosa chinensis HOM05D000094 ORTHO05D002350 2.2e-07 59.3 51 62.7
Prupe.1G287800 Prunus persica HOM05D000094 ORTHO05D002350 3.7e-07 58.5 51 62.7
QL03p074074 Quercus lobata HOM05D000094 ORTHO05D002350 3.7e-07 58.5 51 60.8
EL10Ac6g15008 Beta vulgaris HOM05D000094 ORTHO05D002350 4.9e-07 58.2 51 60.8
AUR62003095 Chenopodium quinoa HOM05D000094 ORTHO05D002350 4.9e-07 58.2 51 60.8
AUR62007913 Chenopodium quinoa HOM05D000094 ORTHO05D002350 4.9e-07 58.2 51 60.8
Ciclev10033427m.g Citrus clementina HOM05D000094 ORTHO05D002350 4.9e-07 58.2 51 60.8
COL.COLO4_27877 Corchorus olitorius HOM05D000094 ORTHO05D002350 4.9e-07 58.2 51 60.8
TWI79G1168 Tripterygium wilfordii HOM05D000094 ORTHO05D002350 4.9e-07 58.2 51 60.8
Potri.008G096400 Populus trichocarpa HOM05D000094 ORTHO05D002350 8.3e-07 57.4 51 60.8
Sabra08G0072700 Salix brachista HOM05D000094 ORTHO05D002350 8.3e-07 57.4 51 60.8
TWI75G0354 Tripterygium wilfordii HOM05D000094 ORTHO05D002350 8.3e-07 57.4 51 58.8
CAN.G381.2 Capsicum annuum HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
DCAR_025434 Daucus carota HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
Duzib268G0444 Durio zibethinus HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
ECA232G4620 Erigeron canadensis HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
Migut.K01273 Erythranthe guttata HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
HanXRQChr15g0488871 Helianthus annuus HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
Lsat_1_v5_gn_4_171740 Lactuca sativa HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
MBI19_g14691_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
MBI19_g36958_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
Oeu051021.1 Olea europaea HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
Peaxi162Scf00451g00014 Petunia axillaris HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
SalBow1G1030 Salvia bowleyana HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
SalBow1G3664 Salvia bowleyana HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
Solyc03g059490.1 Solanum lycopersicum HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
Sopen03g014400 Solanum pennellii HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
PGSC0003DMG400012367 Solanum tuberosum HOM05D000094 ORTHO05D002350 1.1e-06 57.0 51 60.8
Actinidia13391 Actinidia chinensis HOM05D000094 ORTHO05D002350 1.4e-06 56.6 51 58.8
MD17G1060100 Malus domestica HOM05D000094 ORTHO05D002350 1.4e-06 56.6 51 56.9
Atru.chr8.427 Acer truncatum HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
CANSAT64G1859 Cannabis sativa HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Cpa.g.sc14.179 Carica papaya HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
CiPaw.04G055400 Carya illinoinensis HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
CDE10G0021 Ceratophyllum demersum HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Ca_04306_v3 Cicer arietinum L. HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
ClCG07G016300 Citrullus lanatus HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Ciclev10013787m.g Citrus clementina HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
MELO3C024874.2 Cucumis melo HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
CsaV3_4G009130 Cucumis sativus L. HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
ECA246G4836 Erigeron canadensis HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Eucgr.I02037 Eucalyptus grandis HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Glyma.08G246100 Glycine max HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Glyma.13G056200 Glycine max HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Glyma.18G267000 Glycine max HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Glyma.19G030400 Glycine max HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
HanXRQChr17g0546061 Helianthus annuus HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Lj1g0004422 Lotus japonicus HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
MD09G1067100 Malus domestica HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Manes.01G096300 Manihot esculenta HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Medtr6g015190 Medicago truncatula HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Potri.017G094400 Populus trichocarpa HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Prupe.3G254600 Prunus persica HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
PGR004G1325 Punica granatum HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
QL02p067556 Quercus lobata HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Sabra17G0083200 Salix brachista HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Sed0004385 Sechium edule HOM05D000094 ORTHO05D002350 1.9e-06 56.2 51 58.8
Actinidia18055 Actinidia chinensis HOM05D000041 ORTHO05D002350 2.4e-06 55.8 50 62.0
Aqoxy3G03683 Aquilegia oxysepala HOM05D000094 ORTHO05D002350 2.4e-06 55.8 50 62.0
MSTRG.15450 Avicennia marina HOM05D000094 ORTHO05D002350 2.4e-06 55.8 50 62.0
CSS0021715 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D002350 2.4e-06 55.8 50 62.0
CSS0045575 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D002350 2.4e-06 55.8 50 62.0
Gohir.D13G082700 Gossypium hirsutum HOM05D000094 ORTHO05D002350 2.4e-06 55.8 50 62.0
Gorai.013G094500 Gossypium raimondii HOM05D000094 ORTHO05D002350 2.4e-06 55.8 50 62.0
Oeu025538.1 Olea europaea HOM05D000094 ORTHO05D002350 2.4e-06 55.8 51 58.8
Oeu062166.2 Olea europaea HOM05D000094 ORTHO05D002350 2.4e-06 55.8 51 58.8
Thecc.02G329900 Theobroma cacao HOM05D000094 ORTHO05D002350 2.4e-06 55.8 50 62.0
TAR371G1258 Trochodendron aralioides HOM05D000094 ORTHO05D002350 3.2e-06 55.5 51 58.8
CANSAT64G2529 Cannabis sativa HOM05D000094 ORTHO05D002350 4.1e-06 55.1 50 60.0
Cc07_g04260 Coffea canephora HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 58.8
Migut.H00621 Erythranthe guttata HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 58.8
Hma1.2p1_1555F.1_g290430 Hydrangea macrophylla HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 58.8
Lalb_Chr10g0092871 Lupinus albus HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 56.9
Manes.02G055300 Manihot esculenta HOM05D000094 ORTHO05D002350 4.1e-06 55.1 50 60.0
Os03g0756200 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 58.8
PSO017G6230 Papaver somniferum HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 58.8
PSO478G3855 Papaver somniferum HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 58.8
SGA_v2.0_scaffold148G36405 Striga asiatica HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 56.9
TWI32G0907 Tripterygium wilfordii HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 56.9
TWI60G1057 Tripterygium wilfordii HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 56.9
VMungo0464G1036 Vigna mungo HOM05D000094 ORTHO05D002350 4.1e-06 55.1 50 60.0
VMungo0464G1216 Vigna mungo HOM05D000094 ORTHO05D002350 4.1e-06 55.1 50 60.0
Zm00001eb214630 Zea mays HOM05D000094 ORTHO05D002350 4.1e-06 55.1 51 58.8
FvH4_6g46830 Fragaria vesca HOM05D000094 ORTHO05D002350 5.4e-06 54.7 51 56.9
FAN02G0499 Fragaria x ananassa HOM05D000094 ORTHO05D002350 5.4e-06 54.7 51 56.9
FAN05G2065 Fragaria x ananassa HOM05D000094 ORTHO05D002350 5.4e-06 54.7 51 56.9
FAN09G0003 Fragaria x ananassa HOM05D000094 ORTHO05D002350 5.4e-06 54.7 51 56.9
FAN14G5759 Fragaria x ananassa HOM05D000094 ORTHO05D002350 5.4e-06 54.7 51 56.9
Gohir.A13G082966 Gossypium hirsutum HOM05D000094 ORTHO05D002350 5.4e-06 54.7 69 47.8
HanXRQChr08g0211701 Helianthus annuus HOM05D000094 ORTHO05D002350 5.4e-06 54.7 50 60.0
Medtr6g015265 Medicago truncatula HOM05D000094 ORTHO05D002350 5.4e-06 54.7 51 56.9
Nn3g17459 Nelumbo nucifera HOM05D000094 ORTHO05D002350 5.4e-06 54.7 51 56.9
Rhsim10G0049800 Rhododendron simsii HOM05D000094 ORTHO05D002350 5.4e-06 54.7 50 60.0
CiPaw.03G088300 Carya illinoinensis HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
COL.COLO4_04938 Corchorus olitorius HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Duzib147G1339 Durio zibethinus HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Duzib264G1034 Durio zibethinus HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Gohir.A09G009300 Gossypium hirsutum HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Gohir.A11G073000 Gossypium hirsutum HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Gohir.D09G008400 Gossypium hirsutum HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Gohir.D11G077300 Gossypium hirsutum HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Gorai.006G010100 Gossypium raimondii HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Gorai.007G083000 Gossypium raimondii HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Lsat_1_v5_gn_3_97520 Lactuca sativa HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Os07g0602700 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Potri.004G120500 Populus trichocarpa HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
PGR042G1811 Punica granatum HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 58.8
Sc10g0004690 Simmondsia chinensis HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
THA.LOC104800365 Tarenaya hassleriana HOM05D000094 ORTHO05D002350 7.1e-06 54.3 50 60.0
Thecc.04G096100 Theobroma cacao HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
TPR.G10012 Trifolium pratense HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
HPP92_023634 Vanilla planifolia HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
Zm00001eb326880 Zea mays HOM05D000094 ORTHO05D002350 7.1e-06 54.3 51 56.9
AL3G11370 Arabidopsis lyrata HOM05D000094 ORTHO05D002350 9.2e-06 53.9 51 56.9
AT3G02130 Arabidopsis thaliana HOM05D000094 ORTHO05D002350 9.2e-06 53.9 51 56.9
BcaC09g47686 Brassica carinata HOM05D003455 ORTHO05D002350 9.2e-06 53.9 51 56.9
BNapus_Darmor_BZH_scaffold_113p00190 Brassica napus HOM05D003455 ORTHO05D002350 9.2e-06 53.9 51 56.9
BolC1t05918H Brassica oleracea HOM05D003455 ORTHO05D002350 9.2e-06 53.9 51 56.9
BraA01t04626Z Brassica rapa HOM05D003455 ORTHO05D002350 9.2e-06 53.9 51 56.9
CARHR076100 Cardamine hirsuta HOM05D000094 ORTHO05D002350 9.2e-06 53.9 51 56.9
Thhalv10019938m.g Eutrema salsugineum HOM05D000094 ORTHO05D002350 9.2e-06 53.9 51 56.9
Nitab4.5_0000014g0400 Nicotiana tabacum HOM05D000094 ORTHO05D002350 9.2e-06 53.9 51 56.9
Nitab4.5_0003583g0010 Nicotiana tabacum HOM05D000094 ORTHO05D002350 9.2e-06 53.9 51 56.9
Peaxi162Scf00667g00064 Petunia axillaris HOM05D000094 ORTHO05D002350 9.2e-06 53.9 51 56.9
Phvul.004G037500 Phaseolus vulgaris HOM05D000094 ORTHO05D002350 9.2e-06 53.9 50 58.0
Phvul.004G037600 Phaseolus vulgaris HOM05D000094 ORTHO05D002350 9.2e-06 53.9 50 58.0
Sp3g01200 Schrenkiella parvula HOM05D000094 ORTHO05D002350 9.2e-06 53.9 51 56.9
THA.LOC104820995 Tarenaya hassleriana HOM05D000094 ORTHO05D002350 9.2e-06 53.9 51 56.9


User provided reference genes

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