Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45899 Brassica carinata HOM05D000967 ORTHO05D000796 4.9e-25 117.1 62 100.0
C02p29960 Brassica napus HOM05D000967 ORTHO05D039149 1.5e-18 95.5 53 96.2
BcaC03g15383 Brassica carinata HOM05D000967 ORTHO05D039149 7.0e-16 86.7 47 95.7
C09p28880 Brassica napus HOM05D000967 ORTHO05D000796 7.8e-15 83.2 52 84.6
BolC9t55750H Brassica oleracea HOM05D000967 ORTHO05D000796 1.0e-14 82.8 52 82.7
BcaB03g15186 Brassica carinata HOM05D000967 ORTHO05D000796 3.0e-14 81.3 52 84.6
C06p42680 Brassica napus HOM05D000967 ORTHO05D000796 3.0e-14 81.3 52 84.6
BolC6t39171H Brassica oleracea HOM05D000967 ORTHO05D000796 3.0e-14 81.3 52 84.6
Aa31LG7G9780 Aethionema arabicum HOM05D000967 ORTHO05D000796 3.9e-14 80.9 52 82.7
A07p34100 Brassica napus HOM05D000967 ORTHO05D000796 3.9e-14 80.9 52 82.7
AT1G67570 Arabidopsis thaliana HOM05D000967 ORTHO05D000796 8.6e-14 79.7 52 82.7
BcaB03g15367 Brassica carinata HOM05D000967 ORTHO05D000796 8.6e-14 79.7 52 82.7
A07p32480 Brassica napus HOM05D000967 ORTHO05D000796 8.6e-14 79.7 52 82.7
C06p38560 Brassica napus HOM05D000967 ORTHO05D000796 8.6e-14 79.7 52 82.7
BolC6t38948H Brassica oleracea HOM05D000967 ORTHO05D000796 8.6e-14 79.7 52 82.7
BraA07t30872Z Brassica rapa HOM05D000967 ORTHO05D000796 8.6e-14 79.7 52 82.7
Carub.0002s1391 Capsella rubella HOM05D000967 ORTHO05D000796 8.6e-14 79.7 52 82.7
Thhalv10018471m.g Eutrema salsugineum HOM05D000967 ORTHO05D000796 8.6e-14 79.7 52 82.7
AL2G26240 Arabidopsis lyrata HOM05D000967 ORTHO05D000796 1.1e-13 79.3 52 80.8
CARHR060150 Cardamine hirsuta HOM05D000967 ORTHO05D000796 1.1e-13 79.3 52 80.8
Sp5g22590 Schrenkiella parvula HOM05D000967 ORTHO05D000796 1.1e-13 79.3 52 82.7
Actinidia25765 Actinidia chinensis HOM05D000967 ORTHO05D000796 6.8e-11 70.1 52 69.2
BcaC02g10874 Brassica carinata HOM05D000967 ORTHO05D000796 6.8e-11 70.1 49 77.6
Oeu019046.1 Olea europaea HOM05D000967 ORTHO05D000796 8.9e-11 69.7 52 65.4
GSVIVG01010336001 Vitis vinifera HOM05D000967 ORTHO05D000796 1.2e-10 69.3 52 71.2
FvH4_4g24190 Fragaria vesca HOM05D000967 ORTHO05D000796 2.0e-10 68.6 52 67.3
FAN12G2154 Fragaria x ananassa HOM05D000967 ORTHO05D000796 2.0e-10 68.6 52 67.3
FAN17G1603 Fragaria x ananassa HOM05D000967 ORTHO05D000796 2.0e-10 68.6 52 67.3
FAN22G0859 Fragaria x ananassa HOM05D000967 ORTHO05D000796 2.0e-10 68.6 52 67.3
Thecc.02G274900 Theobroma cacao HOM05D000967 ORTHO05D000796 2.0e-10 68.6 52 67.3
Nitab4.5_0002483g0010 Nicotiana tabacum HOM05D000967 ORTHO05D000796 3.4e-10 67.8 52 67.3
RcHm_v2.0_Chr4g0431031 Rosa chinensis HOM05D000967 ORTHO05D000796 3.4e-10 67.8 52 67.3
TAR374G1604 Trochodendron aralioides HOM05D000967 ORTHO05D000796 3.4e-10 67.8 52 67.3
MD13G1113900 Malus domestica HOM05D000967 ORTHO05D000796 5.8e-10 67.0 52 65.4
Peaxi162Scf00076g00118 Petunia axillaris HOM05D000967 ORTHO05D000796 5.8e-10 67.0 52 65.4
PGSC0003DMG402021084 Solanum tuberosum HOM05D000967 ORTHO05D000796 5.8e-10 67.0 52 65.4
BraA07t31036Z Brassica rapa HOM05D000967 ORTHO05D000796 7.5e-10 66.6 79 55.7
Prupe.1G232600 Prunus persica HOM05D000967 ORTHO05D000796 7.5e-10 66.6 52 67.3
QL03p054656 Quercus lobata HOM05D000967 ORTHO05D000796 9.8e-10 66.2 52 69.2
CSS0039560 Camellia sinensis var. sinensis HOM05D000967 ORTHO05D000796 1.7e-09 65.5 43 79.1
ClCG08G017270 Citrullus lanatus HOM05D000967 ORTHO05D000796 1.7e-09 65.5 52 67.3
Ciclev10031526m.g Citrus clementina HOM05D000967 ORTHO05D000796 1.7e-09 65.5 52 65.4
MSTRG.2453 Avicennia marina HOM05D000967 ORTHO05D000796 2.2e-09 65.1 52 61.5
Cc11_g16660 Coffea canephora HOM05D000967 ORTHO05D000796 2.2e-09 65.1 52 63.5
Manes.13G016400 Manihot esculenta HOM05D000967 ORTHO05D000796 2.2e-09 65.1 52 67.3
TWI36G1654 Tripterygium wilfordii HOM05D000967 ORTHO05D000796 2.2e-09 65.1 52 67.3
Migut.E00034 Erythranthe guttata HOM05D000967 ORTHO05D000796 2.9e-09 64.7 52 61.5
Gohir.A05G311100 Gossypium hirsutum HOM05D000967 ORTHO05D000796 3.7e-09 64.3 52 67.3
Gohir.D05G311900 Gossypium hirsutum HOM05D000967 ORTHO05D000796 3.7e-09 64.3 52 67.3
Gorai.009G333100 Gossypium raimondii HOM05D000967 ORTHO05D000796 3.7e-09 64.3 52 67.3
Sopen04g016540 Solanum pennellii HOM05D000967 ORTHO05D000796 3.7e-09 64.3 52 63.5
BcaNung05069 Brassica carinata HOM05D000967 ORTHO05D000796 6.4e-09 63.5 33 97.0
CsaV3_2G025360 Cucumis sativus L. HOM05D000967 ORTHO05D000796 6.4e-09 63.5 52 63.5
Duzib248G0459 Durio zibethinus HOM05D000967 ORTHO05D000796 6.4e-09 63.5 52 63.5
MELO3C010732.2 Cucumis melo HOM05D000967 ORTHO05D000796 8.3e-09 63.2 52 61.5
PSO063G4561 Papaver somniferum HOM05D000967 ORTHO05D000796 8.3e-09 63.2 52 63.5
PSO782G3278 Papaver somniferum HOM05D000967 ORTHO05D000796 8.3e-09 63.2 52 63.5
Atru.chr11.2276 Acer truncatum HOM05D000967 ORTHO05D000796 1.1e-08 62.8 52 65.4
MD16G1112800 Malus domestica HOM05D000967 ORTHO05D000796 1.1e-08 62.8 67 56.7
Haze_12374 Corylus avellana HOM05D000967 ORTHO05D000796 1.4e-08 62.4 52 65.4
BolC3t16842H Brassica oleracea HOM05D000967 ORTHO05D018595 1.9e-08 62.0 80 52.5
Dinv10988 Davidia involucrata HOM05D000967 ORTHO05D000796 1.9e-08 62.0 50 64.0
Lsat_1_v5_gn_4_2941 Lactuca sativa HOM05D000967 ORTHO05D000796 1.9e-08 62.0 52 57.7
PGR102G0429 Punica granatum HOM05D000967 ORTHO05D000796 2.4e-08 61.6 52 65.4
Sed0009047 Sechium edule HOM05D000967 ORTHO05D000796 2.4e-08 61.6 52 61.5
arahy.Tifrunner.gnm1.ann1.G021HG Arachis hypogaea HOM05D000967 ORTHO05D000796 3.2e-08 61.2 52 59.6
arahy.Tifrunner.gnm1.ann1.PK71PJ Arachis hypogaea HOM05D000967 ORTHO05D000796 3.2e-08 61.2 52 59.6
Eucgr.B03466 Eucalyptus grandis HOM05D000967 ORTHO05D000796 3.2e-08 61.2 52 63.5
Cpa.g.sc43.32 Carica papaya HOM05D000967 ORTHO05D000796 4.1e-08 60.8 58 56.9
CiPaw.05G114400 Carya illinoinensis HOM05D000967 ORTHO05D000796 4.1e-08 60.8 52 63.5
Phvul.001G259900 Phaseolus vulgaris HOM05D000967 ORTHO05D000796 5.4e-08 60.5 52 59.6
ClCG08G017260 Citrullus lanatus HOM05D000967 ORTHO05D000796 7.1e-08 60.1 52 63.5
Sabra08G0135900 Salix brachista HOM05D000967 ORTHO05D000796 7.1e-08 60.1 52 61.5
CANSAT01G3110 Cannabis sativa HOM05D000967 ORTHO05D000796 9.2e-08 59.7 52 57.7
MD16G1113100 Malus domestica HOM05D000967 ORTHO05D000796 9.2e-08 59.7 52 57.7
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.2e-07 59.3 52 55.8
Lalb_Chr07g0187351 Lupinus albus HOM05D000967 ORTHO05D000796 1.2e-07 59.3 52 59.6
Solyc04g045310.4 Solanum lycopersicum HOM05D000967 ORTHO05D000796 1.2e-07 59.3 52 59.6
TAR622G0932 Trochodendron aralioides HOM05D000967 ORTHO05D000796 1.2e-07 59.3 51 58.8
Potri.008G178100 Populus trichocarpa HOM05D000967 ORTHO05D000796 1.6e-07 58.9 52 63.5
Glyma.18G008600 Glycine max HOM05D000967 ORTHO05D000796 2.1e-07 58.5 52 57.7
HanXRQChr12g0385941 Helianthus annuus HOM05D000967 ORTHO05D000796 2.1e-07 58.5 52 55.8
Psat7g079440 Pisum sativum HOM05D000967 ORTHO05D000796 2.1e-07 58.5 52 61.5
SGA_v2.0_scaffold87G27134 Striga asiatica HOM05D001410 ORTHO05D003969 2.1e-07 58.5 52 57.7
BcaB05g22315 Brassica carinata HOM05D001074 ORTHO05D001188 3.5e-07 57.8 48 64.6
SalBow8G4441 Salvia bowleyana HOM05D000967 ORTHO05D000796 4.6e-07 57.4 52 57.7
Zm00001eb261680 Zea mays HOM05D000967 ORTHO05D000796 4.6e-07 57.4 52 57.7
HanXRQChr17g0569141 Helianthus annuus HOM05D000967 ORTHO05D000796 6.0e-07 57.0 52 51.9
Ca_18061_v3 Cicer arietinum L. HOM05D000967 ORTHO05D000796 7.8e-07 56.6 52 61.5
Dinv04854 Davidia involucrata HOM05D000967 ORTHO05D000796 7.8e-07 56.6 52 59.6
FAN07G0525 Fragaria x ananassa HOM05D000967 ORTHO05D000796 7.8e-07 56.6 61 52.5
Lj4g0021478 Lotus japonicus HOM05D000967 ORTHO05D000796 7.8e-07 56.6 52 57.7
C05p47980 Brassica napus HOM05D000967 ORTHO05D018595 1.0e-06 56.2 52 69.2
Glyma.05G145900 Glycine max HOM05D000967 ORTHO05D000796 1.0e-06 56.2 52 57.7
Glyma.08G102700 Glycine max HOM05D000967 ORTHO05D000796 1.0e-06 56.2 52 57.7
Medtr8g080210 Medicago truncatula HOM05D000967 ORTHO05D000796 1.0e-06 56.2 52 59.6
Os08g0128200 Oryza sativa ssp. japonica HOM05D000967 ORTHO05D000796 1.0e-06 56.2 52 55.8
Phvul.002G175600 Phaseolus vulgaris HOM05D000967 ORTHO05D000796 1.0e-06 56.2 52 57.7
Sc11g0000620 Simmondsia chinensis HOM05D000967 ORTHO05D000796 1.0e-06 56.2 53 58.5
TPR.G17062 Trifolium pratense HOM05D000967 ORTHO05D000796 1.0e-06 56.2 52 59.6
VMungo0251G2591 Vigna mungo HOM05D000967 ORTHO05D000796 1.0e-06 56.2 52 57.7
GSVIVG01008496001 Vitis vinifera HOM05D000967 ORTHO05D000796 1.0e-06 56.2 52 57.7
C02p14640 Brassica napus HOM05D000967 ORTHO05D018595 1.3e-06 55.8 52 67.3
BolC2t07591H Brassica oleracea HOM05D000967 ORTHO05D018595 1.3e-06 55.8 52 67.3
HanXRQChr06g0174961 Helianthus annuus HOM05D000967 ORTHO05D000796 1.3e-06 55.8 52 53.8
Oeu006694.1 Olea europaea HOM05D000967 ORTHO05D000796 1.3e-06 55.8 52 57.7
PGR102G1657 Punica granatum HOM05D000967 ORTHO05D000796 1.3e-06 55.8 52 57.7
ECA246G3428 Erigeron canadensis HOM05D000967 ORTHO05D003015 1.7e-06 55.5 52 55.8
Lsat_1_v5_gn_3_29581 Lactuca sativa HOM05D000967 ORTHO05D000796 1.7e-06 55.5 52 53.8
Sed0009972 Sechium edule HOM05D000967 ORTHO05D000796 1.7e-06 55.5 52 61.5
vmacro16130 Vaccinium macrocarpon HOM05D000967 ORTHO05D000796 1.7e-06 55.5 52 59.6
Migut.I00521 Erythranthe guttata HOM05D000967 ORTHO05D000796 3.0e-06 54.7 52 55.8
Rhsim12G0104700 Rhododendron simsii HOM05D000208 ORTHO05D000796 5.1e-06 53.9 52 57.7
AUR62029662 Chenopodium quinoa HOM05D000967 ORTHO05D000796 8.6e-06 53.1 52 51.9
Cc04_g10070 Coffea canephora HOM05D000967 ORTHO05D000796 8.6e-06 53.1 43 62.8


User provided reference genes

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