Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 6.1e-82 307.4 149 100.0
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 7.7e-69 263.8 131 98.5
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-63 246.5 131 90.8
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 2.2e-63 245.7 143 87.4
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.8e-62 242.7 120 99.2
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-61 240.0 120 98.3
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.5e-61 238.4 146 79.5
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.0e-60 236.9 131 86.3
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 9.5e-59 230.3 146 76.7
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.1e-58 229.2 131 84.0
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.4e-57 226.5 146 74.7
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 8.6e-52 207.2 143 69.2
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.5e-51 205.7 143 68.5
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 3.3e-51 205.3 143 67.8
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 4.3e-51 204.9 143 69.2
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.7e-50 201.4 131 71.8
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.4e-49 199.9 131 70.2
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.8e-49 199.5 131 73.3
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 4.0e-49 198.4 143 67.1
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 4.4e-48 194.9 130 70.0
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.9e-47 192.2 131 70.2
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 3.2e-46 188.7 174 56.9
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.4e-46 188.0 131 68.7
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.0e-45 186.0 158 60.1
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.5e-45 185.3 131 70.2
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.5e-43 177.2 143 62.2
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 2.8e-42 175.6 131 67.9
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 3.6e-42 175.3 131 61.8
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.7e-42 174.9 139 66.2
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-41 173.7 131 66.4
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.4e-41 173.3 135 63.0
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 5.2e-41 171.4 132 62.9
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 5.2e-41 171.4 132 62.9
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.8e-41 171.0 131 64.9
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 8.9e-41 170.6 145 60.7
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 8.9e-41 170.6 131 64.1
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.2e-40 170.2 131 64.1
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.2e-40 170.2 145 60.0
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-40 169.5 132 62.1
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-40 169.5 132 62.1
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.0e-40 169.5 132 62.1
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 2.0e-40 169.5 132 62.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 2.0e-40 169.5 132 62.1
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 3.4e-40 168.7 131 62.6
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 7.5e-40 167.5 127 64.6
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 9.9e-40 167.2 126 65.9
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.3e-39 166.8 131 64.1
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 2.2e-39 166.0 127 65.4
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 2.9e-39 165.6 131 64.9
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.9e-39 165.6 131 63.4
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 3.7e-39 165.2 131 61.8
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.7e-39 165.2 129 63.6
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 8.3e-39 164.1 129 61.2
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.1e-38 163.7 129 62.8
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.1e-38 163.7 129 62.8
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.4e-38 163.3 129 61.2
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-38 162.9 140 60.7
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.9e-38 162.9 176 52.3
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 3.2e-38 162.2 131 61.8
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 4.1e-38 161.8 127 65.4
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 5.4e-38 161.4 119 67.2
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 5.4e-38 161.4 127 63.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 5.4e-38 161.4 134 59.7
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 7.1e-38 161.0 126 63.5
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 7.1e-38 161.0 143 57.3
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 9.2e-38 160.6 126 63.5
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.2e-37 160.2 131 61.1
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.6e-37 159.8 131 61.1
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.1e-37 159.5 131 60.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.7e-37 159.1 131 61.8
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.7e-37 159.1 132 61.4
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.5e-37 158.7 143 57.3
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.5e-37 158.7 143 57.3
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.5e-37 158.7 126 63.5
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 3.5e-37 158.7 131 60.3
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 3.5e-37 158.7 126 62.7
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 4.6e-37 158.3 132 59.1
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 4.6e-37 158.3 127 62.2
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 4.6e-37 158.3 138 58.0
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 6.0e-37 157.9 126 65.1
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.8e-37 157.5 124 63.7
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 7.8e-37 157.5 143 58.7
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.0e-36 157.1 121 63.6
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.0e-36 157.1 127 63.8
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.3e-36 156.0 124 62.9
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 3.0e-36 155.6 127 60.6
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.9e-36 155.2 127 59.8
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.1e-36 154.8 126 61.1
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 5.1e-36 154.8 120 64.2
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 6.6e-36 154.5 144 56.9
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 8.6e-36 154.1 127 62.2
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.1e-35 153.7 131 60.3
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.5e-35 153.3 131 57.3
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.5e-35 153.3 130 60.8
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.9e-35 152.9 135 57.0
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 1.9e-35 152.9 127 60.6
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.9e-35 152.9 135 56.3
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-35 152.5 104 68.3
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 3.3e-35 152.1 131 57.3
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 3.3e-35 152.1 130 56.9
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.3e-35 151.8 128 60.9
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 5.6e-35 151.4 131 58.0
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 5.6e-35 151.4 127 59.8
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 9.5e-35 150.6 120 64.2
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.6e-34 149.8 130 56.9
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.6e-34 149.8 131 55.7
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.1e-34 149.4 131 60.3
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 2.8e-34 149.1 131 60.3
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.6e-34 148.7 130 58.5
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.6e-34 148.7 127 58.3
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.6e-34 148.7 128 59.4
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 4.7e-34 148.3 131 59.5
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 6.2e-34 147.9 107 67.3
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 6.2e-34 147.9 120 65.0
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 8.1e-34 147.5 127 59.1
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 8.1e-34 147.5 128 57.8
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.4e-33 146.7 128 59.4
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.4e-33 146.0 135 57.0
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.1e-33 145.6 131 56.5
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 5.2e-33 144.8 128 57.8
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 6.8e-33 144.4 154 50.6
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 8.9e-33 144.1 131 56.5
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.2e-32 143.7 120 59.2
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 2.0e-32 142.9 127 60.6
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 2.6e-32 142.5 127 59.8
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.6e-32 142.5 128 56.2
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 5.8e-32 141.4 131 58.8
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 5.8e-32 141.4 130 56.2
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 7.6e-32 141.0 123 57.7
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 2.9e-31 139.0 98 67.3
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.9e-31 139.0 132 55.3
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.8e-31 138.7 131 53.4
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 7.1e-30 134.4 114 59.6
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.7e-29 132.5 148 48.6
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.7e-29 132.5 133 54.1
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 6.0e-29 131.3 156 48.1
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 7.8e-29 131.0 156 47.4
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.3e-28 130.2 130 53.8
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 8.7e-28 127.5 123 54.5
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.9e-27 126.3 128 52.3
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 3.1e-25 119.0 99 57.6
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.0e-20 102.4 124 49.2
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.9e-20 102.1 85 62.4
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 3.3e-19 99.0 84 52.4
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 2.1e-18 96.3 64 73.4
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 8.1e-18 94.4 126 43.7
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.1e-17 94.0 78 61.5
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.8e-17 93.2 64 68.8
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.8e-17 93.2 60 73.3
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.0e-17 92.0 64 68.8
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 6.9e-17 91.3 82 51.2
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 2.9e-15 85.9 125 40.0
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.1e-13 79.7 96 42.7
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 4.6e-13 78.6 90 44.4
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 3.7e-10 68.9 131 35.1
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 1.8e-09 66.6 116 37.1
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 5.3e-09 65.1 43 72.1
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.4e-08 62.4 133 30.1
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-07 60.5 43 62.8
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 3.8e-07 58.9 63 50.8
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 6.4e-07 58.2 100 32.0
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-06 56.6 43 55.8
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 3.2e-06 55.8 126 34.9


User provided reference genes

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