Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45881 Brassica carinata HOM05D009494 ORTHO05D011604 4.0e-63 244.6 124 100.0
BolC6t38790H Brassica oleracea HOM05D009494 ORTHO05D011604 4.0e-63 244.6 124 100.0
C06p36810 Brassica napus HOM05D009494 ORTHO05D011604 3.4e-62 241.5 124 99.2
BraA07t30782Z Brassica rapa HOM05D009494 ORTHO05D011604 4.5e-62 241.1 124 98.4
A07p31500 Brassica napus HOM05D009494 ORTHO05D011604 1.1e-55 219.9 124 93.5
BcaB03g15485 Brassica carinata HOM05D009494 ORTHO05D011604 6.5e-53 210.7 125 85.6
Sp5g24710 Schrenkiella parvula HOM05D009494 ORTHO05D011604 3.3e-41 171.8 125 72.8
BcaC03g15096 Brassica carinata HOM05D009494 ORTHO05D011604 1.7e-40 169.5 125 70.4
C02p26570 Brassica napus HOM05D009494 ORTHO05D011604 1.7e-40 169.5 125 70.4
BolC2t08728H Brassica oleracea HOM05D009494 ORTHO05D011604 1.7e-40 169.5 125 70.4
A02p15990 Brassica napus HOM05D009494 ORTHO05D011604 2.4e-39 165.6 125 69.6
BcaB05g24463 Brassica carinata HOM05D009494 ORTHO05D011604 8.5e-37 157.1 126 68.3
BraA02t06659Z Brassica rapa HOM05D009494 ORTHO05D011604 4.2e-36 154.8 125 68.8
AT1G69588 Arabidopsis thaliana HOM05D009494 ORTHO05D011604 2.1e-35 152.5 125 62.4
Thhalv10019320m.g Eutrema salsugineum HOM05D009494 ORTHO05D011604 6.1e-35 151.0 126 66.7
Carub.0002s1626 Capsella rubella HOM05D009494 ORTHO05D011604 1.0e-34 150.2 125 64.0
BcaB03g14731 Brassica carinata HOM05D009494 ORTHO05D011604 2.6e-33 145.6 125 65.6
BraA07t31178Z Brassica rapa HOM05D009494 ORTHO05D011604 8.2e-32 140.6 125 62.4
A07p35950 Brassica napus HOM05D009494 ORTHO05D011604 2.4e-31 139.0 125 61.6
CARHR062540 Cardamine hirsuta HOM05D009494 ORTHO05D011604 5.3e-31 137.9 125 60.0
BcaC08g46400 Brassica carinata HOM05D009494 ORTHO05D011604 2.6e-30 135.6 125 60.0
BcaNung06224 Brassica carinata HOM05D009494 ORTHO05D011604 2.6e-30 135.6 125 60.0
BolC6t39409H Brassica oleracea HOM05D009494 ORTHO05D011604 2.6e-30 135.6 125 60.0
C06p43330 Brassica napus HOM05D009494 ORTHO05D011604 7.7e-30 134.0 119 61.3
Aa31LG4G11160 Aethionema arabicum HOM05D009494 ORTHO05D011604 1.0e-29 133.7 120 60.0
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 2.5e-20 102.4 120 48.3
BcaC08g46401 Brassica carinata HOM05D009494 ORTHO05D011604 2.5e-12 75.9 71 54.9
C06p43340 Brassica napus HOM05D009494 ORTHO05D011604 2.5e-12 75.9 71 54.9
BolC6t39411H Brassica oleracea HOM05D009494 ORTHO05D011604 2.5e-12 75.9 71 54.9
THA.LOC104823075 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 1.2e-09 67.0 119 39.5
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 2.8e-08 62.4 115 37.4
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 2.8e-08 62.4 118 35.6
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 8.3e-08 60.8 116 34.5
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 8.3e-08 60.8 116 34.5
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 8.3e-08 60.8 77 48.1
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.1e-07 60.5 118 33.9
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.4e-07 60.1 108 39.8
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 5.4e-07 58.2 115 35.7
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 5.4e-07 58.2 113 34.5
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 9.2e-07 57.4 75 40.0
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 1.2e-06 57.0 115 33.9
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.6e-06 56.6 75 40.0
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 3.5e-06 55.5 73 42.5
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 4.5e-06 55.1 89 44.9
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 5.9e-06 54.7 113 33.6
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.7e-06 54.3 111 32.4


User provided reference genes

Program Settings