Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.1e-102 376.7 192 100.0
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-95 353.2 207 90.8
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 1.2e-95 353.2 207 90.8
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.8e-94 349.4 207 89.9
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 2.4e-94 349.0 207 89.4
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 6.9e-86 320.9 204 81.4
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.5e-85 319.7 205 81.5
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.4e-85 318.5 207 82.1
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.3e-84 316.6 205 80.0
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.3e-84 316.6 205 80.0
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.3e-84 316.6 205 80.0
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.3e-84 316.6 205 80.0
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 4.9e-84 314.7 205 79.5
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 1.4e-83 313.2 205 79.0
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.9e-83 312.8 208 79.8
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.2e-82 310.1 205 78.5
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.3e-81 306.6 205 78.5
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 6.7e-81 304.3 205 77.6
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 4.3e-80 301.6 205 75.6
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.1e-78 297.0 203 72.9
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 2.2e-76 289.3 204 71.6
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 4.2e-75 285.0 205 71.2
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 5.5e-75 284.6 204 72.1
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 4.6e-74 281.6 203 71.9
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 4.6e-74 281.6 205 71.7
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 3.9e-73 278.5 203 71.9
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 8.7e-73 277.3 204 70.1
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 2.5e-72 275.8 199 73.9
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 7.4e-72 274.2 198 72.7
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 9.6e-72 273.9 199 72.4
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 9.6e-72 273.9 205 70.2
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 9.6e-72 273.9 203 69.5
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 9.6e-72 273.9 200 70.0
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.6e-71 273.1 186 77.4
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.7e-71 271.9 198 72.2
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 6.2e-71 271.2 205 65.4
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 6.2e-71 271.2 200 69.0
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.1e-70 270.4 205 65.4
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 1.1e-70 270.4 205 68.8
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.4e-70 270.0 205 69.8
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 1.4e-70 270.0 205 69.3
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.4e-70 269.2 196 70.4
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.4e-70 269.2 196 70.4
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.1e-70 268.9 179 75.4
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 3.1e-70 268.9 205 69.3
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 6.9e-70 267.7 198 68.7
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 9.0e-70 267.3 202 68.8
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 9.0e-70 267.3 205 64.4
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 1.2e-69 266.9 197 67.5
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.5e-69 266.5 199 68.3
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.0e-69 266.2 203 68.0
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.4e-69 265.4 203 67.5
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 5.8e-69 264.6 203 66.5
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.8e-69 264.6 196 68.9
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 1.0e-68 263.8 202 67.3
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 2.2e-68 262.7 194 69.6
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 2.9e-68 262.3 199 67.8
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 4.9e-68 261.5 192 69.3
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 8.4e-68 260.8 198 65.7
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 8.4e-68 260.8 198 65.7
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.1e-67 260.4 202 65.8
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.4e-67 260.0 199 66.3
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.9e-67 259.6 198 66.2
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.9e-67 259.6 202 67.3
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.2e-67 258.8 203 64.5
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 4.2e-67 258.5 198 65.7
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 9.3e-67 257.3 203 64.0
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 9.3e-67 257.3 198 65.2
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.2e-66 256.9 198 65.7
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.5e-66 255.4 196 67.3
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.0e-65 253.8 196 67.3
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.3e-65 253.4 203 64.0
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.8e-65 253.1 198 63.6
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 2.3e-65 252.7 204 62.3
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 3.9e-65 251.9 200 64.5
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 8.7e-65 250.8 205 64.9
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 8.7e-65 250.8 198 64.1
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 1.1e-64 250.4 200 62.5
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.1e-64 250.4 201 65.7
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.9e-64 249.6 197 67.0
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.5e-64 249.2 199 64.8
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 3.3e-64 248.8 198 64.1
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 4.3e-64 248.4 198 63.1
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 7.4e-64 247.7 197 66.5
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.3e-63 246.9 194 65.5
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 2.2e-63 246.1 198 61.6
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 6.3e-63 244.6 201 64.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 8.2e-63 244.2 222 60.4
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.2e-63 244.2 209 60.8
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.1e-62 243.8 200 64.5
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 3.1e-62 242.3 205 64.4
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 2.0e-61 239.6 197 63.5
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 3.4e-61 238.8 200 61.5
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 7.6e-61 237.7 205 61.0
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 7.6e-61 237.7 205 60.5
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.0e-60 237.3 198 62.1
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.3e-60 236.9 198 61.1
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 2.9e-60 235.7 198 60.6
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 5.0e-60 235.0 200 64.0
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 8.5e-60 234.2 186 65.1
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.1e-59 233.8 190 65.3
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.4e-59 233.4 201 61.7
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 2.5e-59 232.6 197 62.4
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 7.2e-59 231.1 178 64.0
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 7.2e-59 231.1 181 63.5
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 7.2e-59 231.1 200 59.5
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.6e-58 229.9 181 63.0
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 6.1e-58 228.0 198 58.6
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 6.1e-58 228.0 201 57.2
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.8e-57 226.5 197 61.4
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 2.2e-55 219.5 329 44.1
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 2.2e-55 219.5 201 61.2
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.2e-55 219.5 188 62.8
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.4e-54 216.9 175 63.4
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.6e-53 212.6 198 57.1
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 2.6e-53 212.6 242 50.8
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 2.5e-51 206.1 198 55.6
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 7.2e-51 204.5 168 64.3
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 7.9e-50 201.1 252 47.2
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 2.8e-47 192.6 224 50.0
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.4e-46 189.5 231 50.6
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.2e-45 187.2 201 50.2
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 2.2e-44 183.0 167 57.5
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.9e-44 182.6 201 48.3
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.5e-40 170.2 225 45.3
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 1.3e-39 167.2 194 45.4
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 2.2e-39 166.4 196 49.0
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 5.3e-38 161.8 119 63.0
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 1.3e-36 157.1 128 64.1
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.1e-34 149.8 114 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.4e-33 147.1 182 42.9
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 2.2e-31 139.8 108 68.5
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 9.1e-30 134.4 147 49.7
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 9.1e-30 134.4 112 63.4
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.2e-26 124.0 215 39.5
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.4e-25 120.6 90 66.7
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 5.2e-25 118.6 74 77.0
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 1.5e-24 117.1 114 56.1
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 5.7e-24 115.2 74 74.3
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 9.8e-24 114.4 199 38.2
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.8e-23 112.8 129 47.3
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 3.7e-23 112.5 125 47.2
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.4e-22 108.6 70 77.1
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.4e-22 108.6 70 77.1
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.0e-21 106.7 118 51.7
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 4.5e-21 105.5 102 53.9
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.9e-21 105.1 70 72.9
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-20 103.2 72 69.4
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 3.8e-20 102.4 68 72.1
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-19 100.9 64 75.0
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.6e-18 97.1 73 65.8
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 2.1e-18 96.7 69 71.0
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 3.7e-15 85.9 196 32.1
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 3.5e-13 79.3 99 44.4
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 4.5e-13 79.0 45 80.0
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.8e-13 78.2 115 43.5
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 8.6e-12 74.7 77 53.2
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.1e-11 74.3 193 28.5
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.5e-11 73.2 68 57.4
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 6.1e-10 68.6 38 81.6
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 9.8e-08 61.2 64 48.4
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 1.1e-06 57.8 50 52.0


User provided reference genes

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