Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 6.4e-111 404.1 198 100.0
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 6.4e-111 404.1 198 100.0
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 7.8e-109 397.1 198 98.5
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 4.4e-104 381.3 198 94.9
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 4.4e-104 381.3 198 94.9
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 6.4e-95 350.9 199 88.4
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 5.4e-94 347.8 193 87.6
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 5.4e-94 347.8 193 87.6
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 7.1e-94 347.4 198 86.4
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 2.9e-87 325.5 189 84.7
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 4.2e-86 321.6 199 80.4
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 1.2e-85 320.1 196 78.1
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 1.6e-85 319.7 193 81.9
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 1.0e-84 317.0 182 84.6
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 1.3e-84 316.6 182 84.6
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 5.1e-84 314.7 182 83.5
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 9.6e-83 310.5 182 83.0
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 3.6e-82 308.5 182 81.9
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.8e-81 306.2 196 79.1
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 7.6e-80 300.8 181 76.2
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 4.8e-66 255.0 187 64.7
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 1.4e-65 253.4 195 62.6
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 2.4e-65 252.7 190 63.2
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 4.0e-65 251.9 190 64.2
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 1.2e-64 250.4 169 66.9
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 1.7e-63 246.5 189 61.9
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 3.8e-63 245.4 196 61.7
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 3.8e-63 245.4 198 61.6
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 6.5e-63 244.6 196 56.6
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 6.5e-63 244.6 191 62.8
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 8.4e-63 244.2 188 61.7
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 8.4e-63 244.2 191 62.8
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 4.2e-62 241.9 175 62.9
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 5.5e-62 241.5 195 60.5
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 9.3e-62 240.7 193 60.6
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 1.2e-61 240.4 195 60.0
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 2.1e-61 239.6 183 62.8
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 3.5e-61 238.8 160 67.5
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 7.9e-61 237.7 164 67.1
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 7.9e-61 237.7 182 61.5
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 7.9e-61 237.7 188 60.1
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 1.3e-60 236.9 185 60.0
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.3e-60 236.9 184 61.4
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 2.3e-60 236.1 195 59.0
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 2.3e-60 236.1 192 60.4
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 3.0e-60 235.7 182 61.0
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 3.0e-60 235.7 191 59.7
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 5.1e-60 235.0 191 61.3
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 8.7e-60 234.2 189 61.9
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 8.7e-60 234.2 178 61.2
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 8.7e-60 234.2 183 62.3
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 8.7e-60 234.2 183 63.9
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.5e-59 233.4 194 63.9
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.9e-59 233.0 163 65.6
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 1.9e-59 233.0 182 62.6
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 3.3e-59 232.3 185 60.5
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.3e-59 232.3 176 61.4
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 3.3e-59 232.3 182 60.4
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 4.3e-59 231.9 183 59.6
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 9.6e-59 230.7 185 58.9
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.3e-58 230.3 182 62.1
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 1.3e-58 230.3 183 60.7
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 2.1e-58 229.6 191 59.7
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 2.8e-58 229.2 191 59.2
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 4.8e-58 228.4 187 59.9
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.4e-57 226.9 181 61.3
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 2.4e-57 226.1 180 57.8
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 2.4e-57 226.1 191 57.1
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 2.4e-57 226.1 182 58.2
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 2.4e-57 226.1 189 57.1
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 3.1e-57 225.7 181 59.7
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 4.1e-57 225.3 177 58.8
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 9.0e-57 224.2 182 58.8
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.2e-56 223.8 186 56.5
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 2.6e-56 222.6 180 57.2
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 2.6e-56 222.6 180 57.2
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 4.5e-56 221.9 177 58.8
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 4.5e-56 221.9 177 58.2
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 7.6e-56 221.1 177 58.2
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 7.6e-56 221.1 150 64.0
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 1.0e-55 220.7 182 60.4
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.9e-55 219.2 186 54.3
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 2.9e-55 219.2 150 64.0
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 5.0e-55 218.4 176 59.1
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 5.0e-55 218.4 189 58.2
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 5.0e-55 218.4 189 57.1
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.5e-55 218.0 186 53.8
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 6.5e-55 218.0 187 54.0
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.5e-54 216.1 176 58.5
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 3.2e-54 215.7 184 57.1
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.2e-53 213.8 150 63.3
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 1.6e-53 213.4 196 52.6
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 4.6e-53 211.8 152 61.2
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 5.1e-52 208.4 182 55.5
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 1.1e-51 207.2 180 52.8
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 5.7e-51 204.9 204 49.0
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 9.7e-51 204.1 149 61.1
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 2.2e-50 203.0 209 49.8
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 2.2e-50 203.0 157 59.9
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 2.2e-50 203.0 207 50.7
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.7e-50 202.2 207 48.8
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 2.4e-49 199.5 152 59.9
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 2.4e-49 199.5 219 52.1
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 9.0e-49 197.6 180 56.7
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 9.0e-49 197.6 157 59.2
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.5e-48 196.8 182 53.3
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 7.2e-46 188.0 165 55.2
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 3.0e-44 182.6 185 48.1
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 2.5e-43 179.5 198 48.5
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 3.3e-43 179.1 163 52.1
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.2e-40 170.6 159 50.3
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 5.0e-39 165.2 151 55.6
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 4.4e-35 152.1 118 61.9
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.2e-34 149.8 119 60.5
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 8.2e-34 147.9 111 59.5
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.4e-33 146.4 155 44.5
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.4e-33 146.4 155 44.5
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 9.1e-33 144.4 159 51.6
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.2e-32 144.1 150 44.0
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.6e-32 142.9 94 69.1
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.9e-30 136.7 126 55.6
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 2.0e-27 126.7 96 60.4
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 7.5e-27 124.8 153 40.5
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 2.0e-19 100.1 156 32.1
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 2.8e-18 96.3 86 48.8
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 1.4e-17 94.0 70 58.6
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 4.1e-17 92.4 73 57.5
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 9.1e-17 91.3 71 59.2
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 7.7e-16 88.2 84 48.8
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 8.5e-15 84.7 74 52.7
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 4.2e-14 82.4 67 56.7
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 7.2e-14 81.6 144 29.2
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 1.6e-13 80.5 73 57.5
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 2.3e-12 76.6 63 55.6
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 4.4e-11 72.4 143 23.1
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 1.3e-10 70.9 72 54.2


User provided reference genes

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