Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 5.4e-37 157.1 79 100.0
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 2.1e-25 118.6 79 79.7
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 2.1e-25 118.6 79 79.7
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 2.1e-25 118.6 79 79.7
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 2.1e-25 118.6 79 79.7
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 4.0e-24 114.4 79 75.9
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 5.8e-23 110.5 79 72.2
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 7.6e-23 110.2 79 73.4
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 1.7e-22 109.0 79 73.4
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 6.4e-22 107.1 79 72.2
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 8.4e-22 106.7 79 72.2
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 2.7e-20 101.7 79 65.8
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 3.5e-20 101.3 79 68.4
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 3.5e-20 101.3 78 66.7
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 3.5e-20 101.3 78 66.7
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 4.6e-20 100.9 78 66.7
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 6.0e-20 100.5 79 65.8
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 1.0e-19 99.8 79 65.8
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 1.0e-19 99.8 79 65.8
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 1.3e-19 99.4 79 64.6
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 2.3e-19 98.6 79 63.3
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 3.0e-19 98.2 79 64.6
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 5.1e-19 97.4 79 64.6
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 5.1e-19 97.4 79 63.3
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 5.1e-19 97.4 79 59.5
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 6.6e-19 97.1 79 59.5
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 6.6e-19 97.1 79 64.6
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 8.7e-19 96.7 77 64.9
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 8.7e-19 96.7 77 64.9
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 8.7e-19 96.7 79 64.6
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 8.7e-19 96.7 75 65.3
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 1.1e-18 96.3 79 63.3
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 1.5e-18 95.9 79 59.5
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 1.5e-18 95.9 79 59.5
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 1.5e-18 95.9 79 59.5
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 1.5e-18 95.9 79 59.5
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 1.9e-18 95.5 79 58.2
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 2.5e-18 95.1 79 63.3
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 2.5e-18 95.1 79 62.0
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 3.3e-18 94.7 79 63.3
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 3.3e-18 94.7 79 63.3
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 3.3e-18 94.7 79 63.3
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 3.3e-18 94.7 79 63.3
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 5.6e-18 94.0 79 60.8
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 7.3e-18 93.6 79 60.8
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 7.3e-18 93.6 79 60.8
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 7.3e-18 93.6 79 62.0
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 9.6e-18 93.2 77 62.3
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 9.6e-18 93.2 79 62.0
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 9.6e-18 93.2 76 65.8
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 1.6e-17 92.4 80 62.5
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 2.1e-17 92.0 79 60.8
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 2.8e-17 91.7 79 62.0
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 3.6e-17 91.3 79 60.8
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 3.6e-17 91.3 79 62.0
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 6.2e-17 90.5 79 62.0
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 6.2e-17 90.5 79 62.0
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 1.8e-16 89.0 79 60.8
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 1.8e-16 89.0 75 60.0
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 2.4e-16 88.6 43 100.0
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 2.4e-16 88.6 79 55.7
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.9e-16 87.0 77 59.7
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 9.0e-16 86.7 79 57.0
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 1.2e-15 86.3 80 60.0
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 1.2e-15 86.3 78 59.0
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 2.0e-15 85.5 76 57.9
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 7.6e-15 83.6 78 56.4
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 9.9e-15 83.2 77 58.4
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 3.8e-14 81.3 75 56.0
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 1.1e-13 79.7 77 53.2
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 3.2e-13 78.2 73 53.4
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 3.2e-13 78.2 44 79.5
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 1.2e-12 76.3 49 71.4
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 3.5e-12 74.7 50 70.0
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 4.6e-12 74.3 44 79.5
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 6.0e-12 73.9 46 73.9
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 1.8e-11 72.4 42 78.6
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.3e-11 72.0 45 75.6
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.0e-11 71.6 44 77.3
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.0e-11 71.6 44 77.3
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.9e-11 71.2 44 75.0
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.9e-11 71.2 44 75.0
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.9e-11 71.2 44 75.0
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 6.7e-11 70.5 73 45.2
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.3e-10 68.2 44 70.5
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.3e-10 68.2 44 70.5
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 9.6e-10 66.6 48 64.6
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 1.3e-09 66.2 33 87.9
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 4.8e-09 64.3 79 48.1
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 1.1e-08 63.2 76 46.1
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 4.0e-08 61.2 43 65.1
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 6.9e-08 60.5 43 67.4
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 6.9e-08 60.5 70 48.6
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 6.9e-08 60.5 70 48.6
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 1.2e-07 59.7 79 45.6
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 4.5e-07 57.8 43 62.8
unitig_749.g14119 Utricularia gibba HOM05D007316 ORTHO05D009393 3.8e-06 54.7 75 41.3


User provided reference genes

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