Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 7.7e-115 417.2 211 100.0
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 4.9e-101 371.3 211 90.0
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 9.2e-100 367.1 211 89.1
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 7.8e-99 364.0 212 88.7
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 5.8e-94 347.8 214 84.1
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 2.4e-92 342.4 211 84.4
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 1.2e-91 340.1 213 83.6
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.9e-89 332.8 213 82.6
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.9e-89 332.8 213 82.6
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.9e-89 332.8 213 82.6
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 4.3e-89 331.6 215 82.3
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 4.3e-89 331.6 215 82.3
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 4.3e-89 331.6 216 79.6
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 1.1e-87 327.0 213 81.2
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 8.9e-87 323.9 213 80.3
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 2.6e-86 322.4 214 79.0
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 3.7e-85 318.5 217 78.3
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 6.0e-83 311.2 216 77.8
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 3.6e-72 275.4 214 67.8
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 9.3e-68 260.8 212 66.5
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 2.1e-67 259.6 213 70.0
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 2.1e-59 233.0 214 61.2
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 6.1e-43 178.3 217 51.2
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 2.3e-42 176.4 98 89.8
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 2.3e-42 176.4 98 89.8
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 2.3e-42 176.4 98 89.8
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 2.3e-42 176.4 215 51.2
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 2.5e-41 172.9 214 50.5
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 5.7e-41 171.8 193 53.4
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 1.3e-40 170.6 221 50.7
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 2.8e-40 169.5 183 56.8
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 4.8e-40 168.7 186 52.2
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 6.3e-40 168.3 216 48.1
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.1e-39 167.5 220 49.5
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 1.4e-39 167.2 222 53.2
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 1.4e-39 167.2 184 56.0
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.8e-39 166.8 220 49.1
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 4.1e-39 165.6 180 57.2
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 5.3e-39 165.2 220 48.6
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 1.2e-38 164.1 220 45.5
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 1.5e-38 163.7 190 53.2
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 3.4e-38 162.5 219 47.5
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 3.4e-38 162.5 190 52.6
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 7.7e-38 161.4 186 51.6
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 1.3e-37 160.6 191 50.3
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 2.2e-37 159.8 214 48.1
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 2.2e-37 159.8 214 49.1
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 2.2e-37 159.8 221 48.0
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 2.9e-37 159.5 201 52.7
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 2.9e-37 159.5 220 47.7
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 3.8e-37 159.1 178 51.7
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 8.5e-37 157.9 167 56.3
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 8.5e-37 157.9 219 45.7
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.9e-36 156.8 216 48.1
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 1.9e-36 156.8 181 52.5
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 3.2e-36 156.0 211 44.5
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 5.5e-36 155.2 219 50.2
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 2.7e-35 152.9 220 45.5
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 4.6e-35 152.1 174 51.1
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 7.9e-35 151.4 198 50.5
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 1.4e-34 150.6 203 47.3
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 1.4e-34 150.6 211 46.4
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 2.3e-34 149.8 214 46.7
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 3.0e-34 149.4 215 47.0
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 1.1e-33 147.5 218 47.7
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.5e-33 147.1 216 46.8
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 1.5e-33 147.1 161 52.8
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.0e-33 146.7 216 46.8
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 2.0e-33 146.7 217 45.6
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 2.5e-33 146.4 213 45.5
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.5e-33 146.4 216 46.3
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 3.3e-33 146.0 169 50.9
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.7e-33 145.2 216 45.8
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 9.7e-33 144.4 216 44.4
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 9.7e-33 144.4 142 56.3
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.7e-32 143.7 168 48.8
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 2.2e-32 143.3 226 41.2
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 2.8e-32 142.9 217 43.8
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 4.8e-32 142.1 216 45.4
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 4.8e-32 142.1 193 49.2
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 4.8e-32 142.1 194 49.0
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 8.2e-32 141.4 96 68.8
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 8.2e-32 141.4 173 48.6
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.1e-31 141.0 179 48.0
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.4e-31 140.6 96 69.8
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.4e-31 140.6 189 46.6
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.4e-31 139.8 196 48.0
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 6.9e-31 138.3 216 44.4
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.9e-31 138.3 216 44.4
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 5.9e-30 135.2 189 46.0
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 8.5e-29 131.3 96 65.6
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 8.5e-29 131.3 126 57.1
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 1.4e-28 130.6 214 42.5
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 5.5e-28 128.6 222 41.4
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 9.4e-28 127.9 238 39.1
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 3.6e-27 125.9 186 40.3
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.4e-26 124.0 186 39.8
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.4e-26 124.0 266 36.1
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 6.7e-26 121.7 208 41.3
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 1.1e-25 120.9 121 52.1
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 1.5e-25 120.6 176 43.2
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.5e-25 120.6 247 35.2
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 7.4e-25 118.2 185 40.5
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 1.3e-24 117.5 182 43.4
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 1.7e-24 117.1 208 38.5
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 3.7e-24 115.9 179 41.3
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 3.7e-24 115.9 182 41.8
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.4e-23 113.2 172 41.9
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.6e-22 109.8 165 43.0
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 2.2e-21 106.7 87 59.8
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 6.5e-21 105.1 211 38.9
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 6.5e-21 105.1 69 78.3
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.2e-20 102.4 146 44.5
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.2e-19 100.9 92 59.8
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.2e-19 100.9 92 59.8
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.8e-18 94.7 65 64.6
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 4.1e-15 85.9 89 43.8
BolC2t09172H Brassica oleracea HOM05D000194 ORTHO05D007246 1.2e-14 84.3 71 69.0
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.0e-14 83.6 59 69.5
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 2.0e-14 83.6 59 69.5
BcaC03g15457 Brassica carinata HOM05D000194 ORTHO05D000069 3.5e-14 82.8 59 79.7
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 1.5e-12 77.4 164 37.8
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 5.5e-12 75.5 87 49.4
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 5.5e-12 75.5 87 49.4
A05p27070 Brassica napus HOM05D005829 ORTHO05D007246 7.2e-12 75.1 63 63.5
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.8e-10 70.5 40 72.5
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 2.0e-09 67.0 159 33.3
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 3.4e-09 66.2 124 41.9
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 5.4e-07 58.9 68 45.6


User provided reference genes

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