Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45599 Brassica carinata HOM05D006637 ORTHO05D001736 1.1e-151 540.0 291 100.0
BolC6t38463H Brassica oleracea HOM05D006637 ORTHO05D001736 4.4e-145 518.1 292 97.3
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 4.8e-139 498.0 293 94.2
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 4.9e-120 434.9 246 98.8
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 6.3e-115 417.9 247 95.1
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 3.9e-109 398.7 327 75.8
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 3.5e-97 359.0 327 68.5
BcaB05g24843 Brassica carinata HOM05D006637 ORTHO05D001736 7.2e-95 351.3 304 71.7
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 9.4e-95 350.9 317 71.0
A02p19190 Brassica napus HOM05D006637 ORTHO05D001736 2.3e-93 346.3 302 69.2
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 3.3e-92 342.4 302 68.5
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 3.1e-90 335.9 324 65.1
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 9.1e-90 334.3 302 69.2
BraA02t06967Z Brassica rapa HOM05D006637 ORTHO05D001736 2.6e-89 332.8 299 67.6
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 2.9e-88 329.3 305 68.2
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 2.5e-87 326.2 323 65.0
BraA07t31550Z Brassica rapa HOM05D006637 ORTHO05D001736 2.0e-84 316.6 308 65.3
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 4.8e-83 312.0 325 64.9
A07p40060 Brassica napus HOM05D006637 ORTHO05D001736 1.6e-81 307.0 306 66.3
C06p48410 Brassica napus HOM05D006637 ORTHO05D001736 1.0e-77 294.3 313 63.9
BcaC08g46854 Brassica carinata HOM05D006637 ORTHO05D001736 2.3e-72 276.6 248 69.0
BcaC03g15490 Brassica carinata HOM05D006637 ORTHO05D001736 1.8e-69 266.9 278 62.9
BolC6t39870H Brassica oleracea HOM05D006637 ORTHO05D001736 3.3e-63 246.1 313 58.1
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 3.4e-60 236.1 247 60.7
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 6.4e-43 178.7 268 46.6
BcaB05g24564 Brassica carinata HOM05D006637 ORTHO05D001736 6.0e-33 145.6 141 66.7
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 6.4e-19 99.0 250 36.4
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 3.2e-18 96.7 265 35.1
Lalb_Chr13g0302841 Lupinus albus HOM05D006637 ORTHO05D001736 1.2e-17 94.7 258 37.6
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 1.2e-17 94.7 276 35.1
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 2.1e-17 94.0 273 35.5
Psat4g068920 Pisum sativum HOM05D006637 ORTHO05D001736 2.7e-17 93.6 249 36.5
Glyma.05G020700 Glycine max HOM05D006637 ORTHO05D001736 7.9e-17 92.0 238 34.9
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 1.5e-15 87.8 252 36.9
Phvul.003G184500 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 1.5e-15 87.8 262 33.6
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 1.5e-15 87.8 271 34.7
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 2.5e-15 87.0 263 35.4
Ca_21771_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 5.6e-15 85.9 262 33.6
TPR.G2044 Trifolium pratense HOM05D006637 ORTHO05D001736 5.6e-15 85.9 242 35.1
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 9.6e-15 85.1 249 38.2
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 9.6e-15 85.1 250 35.2
VMungo1215G2016 Vigna mungo HOM05D006637 ORTHO05D001736 1.3e-14 84.7 237 38.0
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 8.1e-14 82.0 261 34.1
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 8.1e-14 82.0 295 33.2
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 8.1e-14 82.0 294 33.3
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 2.4e-13 80.5 265 32.1
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 3.1e-13 80.1 300 32.7
Lalb_Chr07g0178311 Lupinus albus HOM05D006637 ORTHO05D001736 5.3e-13 79.3 248 33.5
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 5.3e-13 79.3 274 32.8
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 6.9e-13 79.0 263 34.2
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 9.0e-13 78.6 241 34.4
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 2.0e-12 77.4 252 34.9
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.0e-12 77.4 282 31.9
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 3.4e-12 76.6 287 32.4
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 5.8e-12 75.9 78 56.4
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 7.6e-12 75.5 183 39.9
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 7.6e-12 75.5 246 32.1
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 1.0e-11 75.1 247 33.2
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 1.0e-11 75.1 289 32.2
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 1.3e-11 74.7 179 39.1
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 1.3e-11 74.7 195 37.9
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 2.2e-11 73.9 190 38.4
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 2.2e-11 73.9 209 37.8
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 3.8e-11 73.2 278 32.4
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 3.8e-11 73.2 278 32.4
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 4.9e-11 72.8 145 42.1
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 8.4e-11 72.0 231 34.2
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.4e-10 71.2 230 34.3
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 1.4e-10 71.2 230 34.3
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 1.4e-10 71.2 242 30.6
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 1.4e-10 71.2 82 53.7
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 1.9e-10 70.9 210 38.1
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 1.9e-10 70.9 213 37.1
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 1.9e-10 70.9 293 30.7
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 2.5e-10 70.5 287 32.8
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 3.2e-10 70.1 149 40.9
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 3.2e-10 70.1 211 34.6
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 4.2e-10 69.7 134 41.0
Medtr4g109570 Medicago truncatula HOM05D006637 ORTHO05D001736 5.5e-10 69.3 212 33.5
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 7.1e-10 68.9 266 32.3
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 9.3e-10 68.6 288 30.6
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 1.2e-09 68.2 250 35.2
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 1.2e-09 68.2 92 47.8
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 2.1e-09 67.4 195 36.9
TPR.G12192 Trifolium pratense HOM05D006637 ORTHO05D001736 2.1e-09 67.4 259 31.7
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 2.7e-09 67.0 97 47.4
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 4.6e-09 66.2 82 50.0
Glyma.04G162200 Glycine max HOM05D006637 ORTHO05D001736 4.6e-09 66.2 255 30.2
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 4.6e-09 66.2 95 43.2
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 6.0e-09 65.9 158 36.7
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 6.0e-09 65.9 254 28.7
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 7.9e-09 65.5 96 46.9
DCAR_011559 Daucus carota HOM05D006637 ORTHO05D001736 7.9e-09 65.5 122 40.2
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 1.0e-08 65.1 240 31.2
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 1.0e-08 65.1 98 48.0
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.3e-08 64.7 92 45.7
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 1.3e-08 64.7 92 45.7
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.3e-08 64.7 92 45.7
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.3e-08 64.7 92 45.7
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 1.3e-08 64.7 92 45.7
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 1.8e-08 64.3 211 33.2
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 1.8e-08 64.3 280 30.7
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 1.8e-08 64.3 96 44.8
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 2.3e-08 63.9 117 39.3
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 3.0e-08 63.5 260 30.8
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 3.9e-08 63.2 171 36.3
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 3.9e-08 63.2 224 31.7
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 3.9e-08 63.2 248 30.6
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 3.9e-08 63.2 70 54.3
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 5.1e-08 62.8 98 42.9
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 5.1e-08 62.8 79 49.4
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 5.1e-08 62.8 77 50.6
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 5.1e-08 62.8 161 37.9
Lsat_1_v5_gn_4_111160 Lactuca sativa HOM05D006637 ORTHO05D001736 5.1e-08 62.8 113 38.1
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 5.1e-08 62.8 142 34.5
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 6.7e-08 62.4 144 38.9
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 8.7e-08 62.0 279 30.5
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 8.7e-08 62.0 160 38.1
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 8.7e-08 62.0 176 34.1
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 1.1e-07 61.6 144 39.6
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.1e-07 61.6 88 47.7
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.1e-07 61.6 123 36.6
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 1.1e-07 61.6 217 33.6
Atru.chr11.1622 Acer truncatum HOM05D003787 ORTHO05D001736 1.9e-07 60.8 154 35.1
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 1.9e-07 60.8 192 33.3
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 1.9e-07 60.8 203 32.0
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 1.9e-07 60.8 94 44.7
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 2.5e-07 60.5 290 32.8
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 4.3e-07 59.7 57 57.9
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 4.3e-07 59.7 93 45.2
Medtr3g025960 Medicago truncatula HOM05D006637 ORTHO05D001736 4.3e-07 59.7 296 28.0
Ca_14358_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 5.7e-07 59.3 295 29.5
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 5.7e-07 59.3 128 36.7
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 5.7e-07 59.3 176 32.4
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 7.4e-07 58.9 93 43.0
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 1.3e-06 58.2 83 45.8
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 1.3e-06 58.2 251 28.7
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.3e-06 58.2 199 34.7
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.3e-06 58.2 257 27.6
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 1.6e-06 57.8 127 37.0
Migut.I00333 Erythranthe guttata HOM05D006637 ORTHO05D001736 1.6e-06 57.8 131 36.6
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 1.6e-06 57.8 149 38.9
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.1e-06 57.4 90 42.2
Psat2g130920 Pisum sativum HOM05D014318 ORTHO05D001736 2.8e-06 57.0 69 53.6
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 3.7e-06 56.6 252 29.8
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 3.7e-06 56.6 133 36.8
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 3.7e-06 56.6 69 52.2
Solyc03g115060.3 Solanum lycopersicum HOM05D006637 ORTHO05D001736 3.7e-06 56.6 249 28.5
Gohir.A12G161000 Gossypium hirsutum HOM05D039012 ORTHO05D001736 4.8e-06 56.2 57 50.9
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 4.8e-06 56.2 94 43.6
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 4.8e-06 56.2 279 31.2
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 4.8e-06 56.2 294 31.3
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 4.8e-06 56.2 268 28.4
Gorai.008G176900 Gossypium raimondii HOM05D039012 ORTHO05D001736 6.2e-06 55.8 57 50.9
Lj2g0027532 Lotus japonicus HOM05D014318 ORTHO05D001736 6.2e-06 55.8 85 45.9
CSS0033309 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 8.2e-06 55.5 98 38.8
Manes.01G027300 Manihot esculenta HOM05D003787 ORTHO05D001736 8.2e-06 55.5 91 42.9
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 8.2e-06 55.5 89 42.7
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 8.2e-06 55.5 282 27.7


User provided reference genes

Program Settings