Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45567 Brassica carinata HOM05D008022 ORTHO05D010147 1.3e-51 206.5 130 100.0
C06p32520 Brassica napus HOM05D008022 ORTHO05D010147 1.3e-51 206.5 130 100.0
BolC6t38374H Brassica oleracea HOM05D008022 ORTHO05D010147 1.3e-51 206.5 130 100.0
BraA07t30517Z Brassica rapa HOM05D008022 ORTHO05D010147 5.4e-42 174.5 130 90.0
BraA02t07039Z Brassica rapa HOM05D008022 ORTHO05D010147 1.6e-30 136.3 176 62.5
BolC2t09304H Brassica oleracea HOM05D008022 ORTHO05D010147 5.2e-29 131.3 172 61.0
BcaC08g47037 Brassica carinata HOM05D008022 ORTHO05D010147 1.2e-28 130.2 164 62.8
A07p41120 Brassica napus HOM05D008022 ORTHO05D010147 2.0e-28 129.4 163 64.4
BraA07t31648Z Brassica rapa HOM05D008022 ORTHO05D010147 5.8e-28 127.9 164 64.6
C06p49540 Brassica napus HOM05D008022 ORTHO05D010147 7.5e-28 127.5 164 62.8
BolC6t39993H Brassica oleracea HOM05D008022 ORTHO05D010147 7.5e-28 127.5 164 62.8
BcaC08g47337 Brassica carinata HOM05D008022 ORTHO05D010147 1.7e-27 126.3 166 62.7
A02p20010 Brassica napus HOM05D008022 ORTHO05D010147 8.3e-27 124.0 183 57.4
BcaC08g47338 Brassica carinata HOM05D008022 ORTHO05D010147 1.9e-26 122.9 65 83.1
BcaB05g24920 Brassica carinata HOM05D008022 ORTHO05D010147 1.9e-23 112.8 173 59.5
CARHR068950 Cardamine hirsuta HOM05D008022 ORTHO05D010147 4.3e-23 111.7 160 63.1
AL2G35530 Arabidopsis lyrata HOM05D008022 ORTHO05D010147 5.6e-23 111.3 173 60.1
C02p34060 Brassica napus HOM05D008022 ORTHO05D010147 5.6e-23 111.3 52 92.3
Carub.0002s2241 Capsella rubella HOM05D008022 ORTHO05D010147 2.0e-20 102.8 68 70.6
TWI12G0111 Tripterygium wilfordii HOM05D008022 ORTHO05D010147 2.8e-14 82.4 67 55.2
Phvul.001G009600 Phaseolus vulgaris HOM05D008022 ORTHO05D010147 6.2e-14 81.3 72 48.6
Atru.chr13.362 Acer truncatum HOM05D008022 ORTHO05D010147 3.1e-13 79.0 74 50.0
EL10Ac1g00558 Beta vulgaris HOM05D008022 ORTHO05D010147 1.5e-12 76.6 49 61.2
Eucgr.F01845 Eucalyptus grandis HOM05D008022 ORTHO05D010147 1.5e-12 76.6 71 49.3
AT1G75550 Arabidopsis thaliana HOM05D008022 ORTHO05D010147 2.6e-12 75.9 159 56.0
Cpa.g.sc140.17 Carica papaya HOM05D008022 ORTHO05D010147 2.6e-12 75.9 70 52.9
ECA236G3926 Erigeron canadensis HOM05D008022 ORTHO05D010147 7.6e-12 74.3 48 58.3
Lalb_Chr22g0354471 Lupinus albus HOM05D008022 ORTHO05D010147 7.6e-12 74.3 70 44.3
Lalb_Chr08g0246011 Lupinus albus HOM05D008022 ORTHO05D010147 9.9e-12 73.9 77 46.8
CANSAT25G1466 Cannabis sativa HOM05D008022 ORTHO05D010147 1.3e-11 73.6 55 52.7
CiPaw.08G062600 Carya illinoinensis HOM05D008022 ORTHO05D010147 1.7e-11 73.2 80 42.5
MD15G1017600 Malus domestica HOM05D008022 ORTHO05D010147 1.7e-11 73.2 45 62.2
Lsat_1_v5_gn_7_91921 Lactuca sativa HOM05D008022 ORTHO05D010147 2.2e-11 72.8 77 44.2
Lj1g0009874 Lotus japonicus HOM05D008022 ORTHO05D010147 2.2e-11 72.8 82 40.2
Potri.005G234601 Populus trichocarpa HOM05D008022 ORTHO05D010147 2.2e-11 72.8 40 67.5
VMungo1309G0619 Vigna mungo HOM05D002906 ORTHO05D003211 2.9e-11 72.4 45 64.4
CSS0048901 Camellia sinensis var. sinensis HOM05D008022 ORTHO05D010147 6.4e-11 71.2 40 65.0
CsaV3_7G006070 Cucumis sativus L. HOM05D008022 ORTHO05D010147 1.4e-10 70.1 61 49.2
Manes.05G152650 Manihot esculenta HOM05D008022 ORTHO05D010147 1.4e-10 70.1 50 58.0
Medtr1g023270 Medicago truncatula HOM05D008022 ORTHO05D010147 1.9e-10 69.7 79 41.8
arahy.Tifrunner.gnm1.ann1.QUSF5W Arachis hypogaea HOM05D008022 ORTHO05D010147 5.4e-10 68.2 40 65.0
Cc10_g02120 Coffea canephora HOM05D008022 ORTHO05D010147 5.4e-10 68.2 41 63.4
TPR.G40293 Trifolium pratense HOM05D008022 ORTHO05D010147 5.4e-10 68.2 78 39.7
arahy.Tifrunner.gnm1.ann1.RV6KDM Arachis hypogaea HOM05D008022 ORTHO05D010147 7.1e-10 67.8 73 43.8
Nitab4.5_0000493g0010 Nicotiana tabacum HOM05D008022 ORTHO05D010147 7.1e-10 67.8 40 65.0
Psat6g005360 Pisum sativum HOM05D008022 ORTHO05D010147 7.1e-10 67.8 77 40.3
Glyma.17G255200 Glycine max HOM05D008022 ORTHO05D010147 9.3e-10 67.4 69 42.0
CiPaw.07G154400 Carya illinoinensis HOM05D008022 ORTHO05D010147 1.2e-09 67.0 85 42.4
Duzib041G0305 Durio zibethinus HOM05D008022 ORTHO05D010147 1.6e-09 66.6 40 62.5
Nn5g29204 Nelumbo nucifera HOM05D008022 ORTHO05D010147 1.6e-09 66.6 78 42.3
Medtr3g113080 Medicago truncatula HOM05D008022 ORTHO05D010147 2.1e-09 66.2 79 39.2
PGR031G0261 Punica granatum HOM05D008022 ORTHO05D010147 2.7e-09 65.9 49 55.1
Sed0002960 Sechium edule HOM05D008022 ORTHO05D010147 2.7e-09 65.9 90 36.7
FvH4_2g39010 Fragaria vesca HOM05D008022 ORTHO05D010147 3.5e-09 65.5 53 50.9
Gohir.A05G188500 Gossypium hirsutum HOM05D008022 ORTHO05D010147 3.5e-09 65.5 40 60.0
Gohir.D05G191600 Gossypium hirsutum HOM05D008022 ORTHO05D010147 3.5e-09 65.5 40 60.0
Gorai.009G196900 Gossypium raimondii HOM05D008022 ORTHO05D010147 6.0e-09 64.7 40 60.0
Glyma.14G216600 Glycine max HOM05D008022 ORTHO05D010147 1.0e-08 63.9 69 40.6
Lj5g0000972 Lotus japonicus HOM05D008022 ORTHO05D010147 1.0e-08 63.9 40 60.0
arahy.Tifrunner.gnm1.ann1.0AGT2R Arachis hypogaea HOM05D008022 ORTHO05D010147 3.0e-08 62.4 49 46.9
Cfa013902 Carpinus fangiana HOM05D002906 ORTHO05D003211 3.0e-08 62.4 41 58.5
PSO541G2481 Papaver somniferum HOM05D008022 ORTHO05D010147 3.9e-08 62.0 41 63.4
Aqoxy6G02393 Aquilegia oxysepala HOM05D008022 ORTHO05D010147 1.9e-07 59.7 41 63.4
MELO3C018685.2 Cucumis melo HOM05D008022 ORTHO05D010147 6.2e-06 54.7 81 40.7


User provided reference genes

Program Settings