Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 0.0e+00 1439.9 788 100.0
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 0.0e+00 1355.5 788 95.1
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 0.0e+00 1142.1 736 88.0
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 4.0e-241 838.6 856 63.1
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 1.5e-227 793.5 636 73.4
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 4.9e-154 549.3 871 45.8
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 2.8e-69 267.7 723 33.3
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 5.9e-67 260.0 722 34.1
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 8.0e-64 249.6 742 32.5
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 2.3e-63 248.1 750 32.3
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 1.2e-40 172.6 944 26.8
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 4.6e-35 154.1 334 36.2
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 7.1e-28 130.2 276 39.5
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 4.6e-19 100.9 646 25.9
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 8.6e-18 96.7 106 50.9
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 7.1e-12 77.0 95 47.4
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 1.6e-11 75.9 95 46.3
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 2.7e-11 75.1 125 44.8
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 4.6e-11 74.3 95 45.3
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 5.1e-10 70.9 37 83.8
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.9e-09 68.9 125 37.6
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 2.5e-09 68.6 40 75.0
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 4.3e-09 67.8 43 72.1
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 9.6e-09 66.6 97 39.2
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.6e-08 65.9 84 44.0
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 1.6e-08 65.9 44 68.2
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 1.6e-08 65.9 98 41.8
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 2.1e-08 65.5 89 41.6
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 2.1e-08 65.5 40 72.5
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 2.8e-08 65.1 37 75.7
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 3.6e-08 64.7 40 70.0
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 4.8e-08 64.3 40 70.0
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 6.2e-08 63.9 40 67.5
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 1.1e-07 63.2 52 55.8
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 1.1e-07 63.2 63 49.2
FvH4_2g13360 Fragaria vesca HOM05D012764 ORTHO05D017940 1.1e-07 63.2 86 44.2
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.1e-07 63.2 86 44.2
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.8e-07 62.4 103 40.8
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.8e-07 62.4 103 40.8
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 1.8e-07 62.4 118 39.0
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 2.4e-07 62.0 103 40.8
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 3.1e-07 61.6 86 41.9
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 4.0e-07 61.2 39 69.2
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 4.0e-07 61.2 43 60.5
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 4.0e-07 61.2 86 44.2
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 5.3e-07 60.8 76 44.7
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 6.9e-07 60.5 84 41.7
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 6.9e-07 60.5 36 72.2
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 6.9e-07 60.5 67 49.3
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.2e-06 59.7 64 48.4
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 1.2e-06 59.7 44 61.4
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 1.2e-06 59.7 40 65.0
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 1.5e-06 59.3 66 50.0
Medtr6g043630 Medicago truncatula HOM05D014873 ORTHO05D015681 1.5e-06 59.3 37 70.3
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 2.0e-06 58.9 59 49.2
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 2.6e-06 58.5 39 69.2
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.6e-06 58.5 39 69.2
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 3.4e-06 58.2 40 65.0
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 4.5e-06 57.8 44 59.1
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 5.8e-06 57.4 39 66.7
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 5.8e-06 57.4 44 56.8
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 5.8e-06 57.4 39 61.5
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 5.8e-06 57.4 36 72.2
Sp5g31890 Schrenkiella parvula HOM05D010491 ORTHO05D012559 5.8e-06 57.4 206 29.6
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 7.6e-06 57.0 35 68.6
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 7.6e-06 57.0 33 75.8
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 7.6e-06 57.0 88 39.8
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 7.6e-06 57.0 88 39.8
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 9.9e-06 56.6 302 25.5
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 9.9e-06 56.6 91 36.3


User provided reference genes

Program Settings