Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45393 Brassica carinata HOM05D007341 ORTHO05D009075 1.3e-82 309.7 155 100.0
C06p30240 Brassica napus HOM05D007341 ORTHO05D009075 1.3e-82 309.7 155 100.0
BolC6t38187H Brassica oleracea HOM05D007341 ORTHO05D009075 1.3e-82 309.7 155 100.0
A07p27380 Brassica napus HOM05D007341 ORTHO05D009075 1.1e-78 296.6 155 96.8
BraA07t30379Z Brassica rapa HOM05D007341 ORTHO05D009075 3.3e-78 295.0 155 96.1
BcaB02g07190 Brassica carinata HOM05D007341 ORTHO05D009075 3.2e-73 278.5 157 91.1
CARHR072660 Cardamine hirsuta HOM05D007341 ORTHO05D009075 3.3e-70 268.5 156 87.2
Thhalv10019269m.g Eutrema salsugineum HOM05D007341 ORTHO05D009075 9.5e-70 266.9 159 88.1
Sp5g34040 Schrenkiella parvula HOM05D007341 ORTHO05D009075 8.3e-66 253.8 156 84.0
AT1G78995 Arabidopsis thaliana HOM05D007341 ORTHO05D009075 4.1e-65 251.5 161 82.0
Carub.0002s2586 Capsella rubella HOM05D007341 ORTHO05D009075 9.2e-65 250.4 158 84.2
AL2G39450 Arabidopsis lyrata HOM05D007341 ORTHO05D009075 6.8e-60 234.2 160 78.1
THA.LOC104808109 Tarenaya hassleriana HOM05D007341 ORTHO05D009075 1.1e-46 190.3 167 65.9
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 2.7e-40 169.1 116 71.6
CiPaw.01G092200 Carya illinoinensis HOM05D007341 ORTHO05D009075 1.3e-39 166.8 147 61.2
Cfa002160 Carpinus fangiana HOM05D007341 ORTHO05D009075 1.7e-39 166.4 166 56.0
Eucgr.F04060 Eucalyptus grandis HOM05D007341 ORTHO05D009075 2.3e-39 166.0 138 64.5
QL05p085130 Quercus lobata HOM05D007341 ORTHO05D009075 1.1e-38 163.7 185 53.5
Haze_16246 Corylus avellana HOM05D007341 ORTHO05D009075 2.5e-38 162.5 166 56.6
TWI12G0959 Tripterygium wilfordii HOM05D007341 ORTHO05D009075 2.5e-38 162.5 123 67.5
Gohir.A05G116700 Gossypium hirsutum HOM05D007341 ORTHO05D009075 3.3e-38 162.2 169 58.0
Prupe.3G028000 Prunus persica HOM05D007341 ORTHO05D009075 4.3e-38 161.8 153 59.5
Cc06_g16890 Coffea canephora HOM05D007341 ORTHO05D009075 5.6e-38 161.4 139 64.7
GSVIVG01029444001 Vitis vinifera HOM05D007341 ORTHO05D009075 7.3e-38 161.0 109 75.2
Gohir.D05G117600 Gossypium hirsutum HOM05D007341 ORTHO05D009075 9.6e-38 160.6 169 57.4
Gorai.009G121500 Gossypium raimondii HOM05D007341 ORTHO05D009075 9.6e-38 160.6 169 58.0
Sed0003722 Sechium edule HOM05D007341 ORTHO05D009075 9.6e-38 160.6 98 78.6
Thecc.06G049400 Theobroma cacao HOM05D007341 ORTHO05D009075 1.3e-37 160.2 151 60.9
Sabra07G0002700 Salix brachista HOM05D007341 ORTHO05D009075 2.1e-37 159.5 179 53.1
MELO3C019561.2 Cucumis melo HOM05D007341 ORTHO05D009075 2.8e-37 159.1 98 77.6
Actinidia38822 Actinidia chinensis HOM05D007341 ORTHO05D009075 8.1e-37 157.5 129 62.8
CsaV3_3G018050 Cucumis sativus L. HOM05D007341 ORTHO05D009075 8.1e-37 157.5 94 80.9
Dinv20313 Davidia involucrata HOM05D007341 ORTHO05D009075 1.4e-36 156.8 139 61.9
Lsat_1_v5_gn_9_114620 Lactuca sativa HOM05D007341 ORTHO05D009075 1.4e-36 156.8 103 72.8
Nitab4.5_0000349g0220 Nicotiana tabacum HOM05D007341 ORTHO05D009075 2.4e-36 156.0 98 78.6
Ciclev10029418m.g Citrus clementina HOM05D007341 ORTHO05D009075 4.0e-36 155.2 100 73.0
PGR102G3137 Punica granatum HOM05D007341 ORTHO05D009075 4.0e-36 155.2 154 57.1
RcHm_v2.0_Chr2g0148351 Rosa chinensis HOM05D007341 ORTHO05D009075 5.3e-36 154.8 99 72.7
CSS0015626 Camellia sinensis var. sinensis HOM05D007341 ORTHO05D009075 9.0e-36 154.1 167 53.9
FvH4_6g36350 Fragaria vesca HOM05D007341 ORTHO05D009075 1.2e-35 153.7 162 52.5
FAN02G2832 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.5e-35 153.3 160 51.9
Potri.007G003600 Populus trichocarpa HOM05D007341 ORTHO05D009075 3.4e-35 152.1 182 51.1
Duzib235G0177 Durio zibethinus HOM05D007341 ORTHO05D009075 4.5e-35 151.8 168 54.2
HanXRQChr03g0072101 Helianthus annuus HOM05D007341 ORTHO05D009075 4.5e-35 151.8 101 72.3
Solyc10g086470.2 Solanum lycopersicum HOM05D007341 ORTHO05D009075 4.5e-35 151.8 150 58.7
Sopen10g035850 Solanum pennellii HOM05D007341 ORTHO05D009075 4.5e-35 151.8 150 58.7
PGSC0003DMG400019203 Solanum tuberosum HOM05D007341 ORTHO05D009075 4.5e-35 151.8 154 57.8
ECA240G2002 Erigeron canadensis HOM05D007341 ORTHO05D009075 5.8e-35 151.4 143 55.2
FAN09G2851 Fragaria x ananassa HOM05D007341 ORTHO05D009075 1.3e-34 150.2 162 51.9
TAR636G1203 Trochodendron aralioides HOM05D007341 ORTHO05D009075 1.7e-34 149.8 122 66.4
CDE05G1356 Ceratophyllum demersum HOM05D007341 ORTHO05D009075 2.2e-34 149.4 123 63.4
AUR62001305 Chenopodium quinoa HOM05D007341 ORTHO05D009075 2.9e-34 149.1 126 62.7
AUR62025687 Chenopodium quinoa HOM05D007341 ORTHO05D009075 3.8e-34 148.7 126 61.9
CANSAT01G1666 Cannabis sativa HOM05D007341 ORTHO05D009075 4.9e-34 148.3 105 68.6
MSTRG.26115 Avicennia marina HOM05D007341 ORTHO05D009075 6.4e-34 147.9 147 57.8
Hma1.2p1_0422F.1_g150100 Hydrangea macrophylla HOM05D007341 ORTHO05D009075 6.4e-34 147.9 127 59.8
MD09G1169800 Malus domestica HOM05D007341 ORTHO05D009075 8.4e-34 147.5 161 50.9
Aqoxy7G02561 Aquilegia oxysepala HOM05D007341 ORTHO05D009075 2.4e-33 146.0 132 59.1
Lalb_Chr24g0392671 Lupinus albus HOM05D007341 ORTHO05D009075 2.4e-33 146.0 144 57.6
DCAR_027600 Daucus carota HOM05D007341 ORTHO05D009075 1.6e-32 143.3 161 53.4
Aa31LG4G1990 Aethionema arabicum HOM05D007341 ORTHO05D009075 3.5e-32 142.1 135 64.4
EL10Ac7g18105 Beta vulgaris HOM05D007341 ORTHO05D009075 4.6e-32 141.7 126 58.7
unitig_748.g7237 Utricularia gibba HOM05D007341 ORTHO05D009075 4.6e-32 141.7 145 55.9
Mapoly0061s0126 Marchantia polymorpha HOM05D007341 ORTHO05D009075 6.0e-32 141.4 95 71.6
Migut.K00075 Erythranthe guttata HOM05D007341 ORTHO05D009075 7.9e-32 141.0 125 61.6
Hund18551 Selenicereus undatus HOM05D007341 ORTHO05D009075 3.0e-31 139.0 160 53.8
Pp3c15_22740 Physcomitrium patens HOM05D007341 ORTHO05D009075 3.9e-31 138.7 115 61.7
Phvul.005G082000 Phaseolus vulgaris HOM05D007341 ORTHO05D009075 1.5e-30 136.7 142 54.2
ATR0626G096 Amborella trichopoda HOM05D007341 ORTHO05D009075 1.9e-30 136.3 90 72.2
HPP92_026441 Vanilla planifolia HOM05D007341 ORTHO05D009075 3.3e-30 135.6 133 55.6
Glyma.15G000400 Glycine max HOM05D007341 ORTHO05D009075 4.3e-30 135.2 165 49.1
Medtr6g004140 Medicago truncatula HOM05D007341 ORTHO05D009075 5.6e-30 134.8 140 55.0
Zm00001eb227230 Zea mays HOM05D007341 ORTHO05D009075 1.6e-29 133.3 100 65.0
Os06g0704200 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 3.1e-28 129.0 113 61.1
C02p36120 Brassica napus HOM05D007341 ORTHO05D009075 4.0e-28 128.6 63 90.5
SMO232G0085 Selaginella moellendorffii HOM05D007341 ORTHO05D009075 1.5e-27 126.7 119 58.8
DCAR_011722 Daucus carota HOM05D007341 ORTHO05D009075 4.5e-27 125.2 149 49.7
SGA_v2.0_scaffold94G28462 Striga asiatica HOM05D007341 ORTHO05D009075 1.3e-26 123.6 105 61.0
PSO063G2737 Papaver somniferum HOM05D007341 ORTHO05D009075 6.5e-26 121.3 150 50.0
PSO170G4447 Papaver somniferum HOM05D007341 ORTHO05D009075 1.1e-25 120.6 139 51.1
ClCG05G010440 Citrullus lanatus HOM05D007341 ORTHO05D009075 9.3e-25 117.5 81 71.6
Nitab4.5_0001911g0010 Nicotiana tabacum HOM05D007341 ORTHO05D009075 1.6e-24 116.7 148 52.7
FAN14G2925 Fragaria x ananassa HOM05D007341 ORTHO05D009075 8.7e-23 110.9 162 43.8
FAN14G4935 Fragaria x ananassa HOM05D007341 ORTHO05D009075 8.7e-23 110.9 162 43.8
Cpa.g.sc4293.1 Carica papaya HOM05D007341 ORTHO05D009075 1.5e-22 110.2 131 51.1
Sabra14G0002900 Salix brachista HOM05D007341 ORTHO05D009075 1.5e-22 110.2 81 61.7
VMungo1080G1509 Vigna mungo HOM05D007341 ORTHO05D009075 3.7e-21 105.5 137 50.4
Nn8g41280 Nelumbo nucifera HOM05D007341 ORTHO05D009075 4.8e-21 105.1 113 55.8
Sc16g0003760 Simmondsia chinensis HOM05D007341 ORTHO05D009075 1.4e-20 103.6 80 67.5
Peaxi162Scf00330g00029 Petunia axillaris HOM05D007341 ORTHO05D009075 1.1e-17 94.0 178 40.4
Oeu004021.1 Olea europaea HOM05D007341 ORTHO05D009075 3.2e-17 92.4 113 52.2
Os02g0138100 Oryza sativa ssp. japonica HOM05D007341 ORTHO05D009075 9.3e-17 90.9 76 57.9
Cre01.g000800 Chlamydomonas reinhardtii HOM05D007341 ORTHO05D009075 3.5e-16 89.0 120 40.8
Rhsim08G0252300 Rhododendron simsii HOM05D000912 ORTHO05D009075 3.0e-15 85.9 105 52.4
Manes.06G177800 Manihot esculenta HOM05D007341 ORTHO05D009075 8.7e-15 84.3 136 40.4
vmacro18722 Vaccinium macrocarpon HOM05D007341 ORTHO05D009075 8.7e-15 84.3 137 45.3
SalBow1G8719 Salvia bowleyana HOM05D007341 ORTHO05D009075 7.4e-14 81.3 115 47.0
Psat6g000680 Pisum sativum HOM05D007341 ORTHO05D009075 1.3e-13 80.5 107 50.5
MCO04G269 Micromonas commoda HOM05D007341 ORTHO05D009075 2.2e-13 79.7 128 36.7
MBI13_g34919_MAGBIO Magnolia biondii HOM05D007341 ORTHO05D009075 2.8e-13 79.3 73 58.9
Lj9A544T49 Lonicera japonica HOM05D007341 ORTHO05D009075 4.8e-13 78.6 67 61.2
SalBow1G7986 Salvia bowleyana HOM05D007341 ORTHO05D009075 8.2e-13 77.8 92 52.2
Ah.08g218010 Amaranthus hybridus HOM05D007341 ORTHO05D009075 1.4e-12 77.0 132 40.2
PRCOL_00000561 Prasinoderma coloniale HOM05D007341 ORTHO05D009075 1.8e-12 76.6 88 44.3
AagrBONN_evm.TU.Sc2ySwM_368.1307 Anthoceros agrestis HOM05D007341 ORTHO05D009075 3.8e-10 68.9 123 42.3
BolC2t09625H Brassica oleracea HOM05D031861 ORTHO05D009075 5.5e-09 65.1 42 83.3
BraA02t07248Z Brassica rapa HOM05D031861 ORTHO05D009075 2.7e-08 62.8 112 46.4
A02p22440 Brassica napus HOM05D031861 ORTHO05D009075 6.1e-08 61.6 99 49.5
Zm00001eb231900 Zea mays HOM05D007341 ORTHO05D009075 5.1e-07 58.5 77 44.2


User provided reference genes

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