Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 6.5e-129 464.2 247 100.0
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 3.5e-98 362.1 210 92.9
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 3.8e-97 358.6 205 93.2
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 7.6e-53 211.5 408 41.9
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 7.6e-53 211.5 423 41.4
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-52 210.7 409 41.6
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-51 207.6 408 41.4
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.1e-51 207.6 408 41.4
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.6e-50 203.8 409 40.8
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.6e-50 203.8 409 40.8
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.5e-48 196.4 279 48.7
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 7.3e-48 194.9 279 48.7
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 2.9e-44 183.0 283 47.0
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 3.8e-44 182.6 283 46.6
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.2e-37 161.0 316 42.4
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 7.6e-37 158.3 289 42.6
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 6.4e-36 155.2 284 43.7
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 5.1e-33 145.6 279 39.4
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.6e-33 145.2 276 40.6
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-32 144.4 239 43.5
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 4.3e-32 142.5 286 38.8
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.3e-31 141.0 280 38.2
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.3e-31 141.0 287 38.3
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.8e-31 139.8 283 37.5
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.8e-31 139.8 280 37.9
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.6e-31 139.4 281 39.5
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 6.2e-31 138.7 280 38.9
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 6.2e-31 138.7 279 38.4
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 8.1e-31 138.3 282 39.0
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 8.1e-31 138.3 282 39.0
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.4e-30 137.5 275 40.7
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.8e-30 137.1 281 38.4
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.4e-30 136.7 276 37.0
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.1e-30 136.3 281 39.5
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 5.3e-30 135.6 285 37.5
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 6.9e-30 135.2 285 37.9
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 9.0e-30 134.8 276 39.1
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 9.0e-30 134.8 290 36.6
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.2e-29 134.4 283 36.7
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.5e-29 134.0 281 37.7
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.5e-29 134.0 290 37.6
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.5e-29 134.0 290 37.6
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.0e-29 133.7 285 38.9
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.0e-29 133.7 277 38.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.0e-29 133.7 281 38.8
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.6e-29 133.3 290 37.6
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.6e-29 133.3 290 37.6
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.4e-29 132.9 277 37.9
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 3.4e-29 132.9 283 37.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.5e-29 132.5 276 38.4
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 5.8e-29 132.1 282 36.9
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 5.8e-29 132.1 291 37.8
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.3e-28 131.0 281 38.8
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.3e-28 131.0 288 38.2
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.7e-28 130.6 282 36.5
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.7e-28 130.6 281 35.9
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.2e-28 130.2 284 37.3
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.2e-28 130.2 281 37.0
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.2e-28 130.2 281 36.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 2.9e-28 129.8 281 36.7
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.9e-28 129.8 275 37.5
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 6.4e-28 128.6 288 37.5
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 6.4e-28 128.6 291 36.1
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.9e-27 127.1 298 36.6
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.4e-27 126.7 282 36.2
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.4e-27 126.7 282 35.1
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.2e-27 126.3 287 37.6
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 5.5e-27 125.6 282 36.9
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.1e-27 125.2 275 36.7
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 9.3e-27 124.8 281 37.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.2e-26 124.4 284 37.7
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.6e-26 124.0 276 36.6
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.7e-26 123.2 127 57.5
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.7e-26 123.2 183 47.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.7e-26 123.2 282 37.9
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 4.6e-26 122.5 286 36.7
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 4.6e-26 122.5 287 35.9
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 6.0e-26 122.1 285 35.1
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.0e-26 122.1 285 36.5
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.0e-26 122.1 285 37.2
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.0e-25 121.3 282 36.9
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.3e-25 120.9 290 35.5
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.3e-25 120.9 287 35.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.8e-25 120.6 286 36.0
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.9e-25 119.4 278 37.8
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 3.9e-25 119.4 282 34.8
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.7e-25 118.6 120 59.2
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 8.7e-25 118.2 127 56.7
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 8.7e-25 118.2 286 35.7
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.1e-24 117.9 292 34.9
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.5e-24 117.5 287 35.5
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 4.3e-24 115.9 288 36.1
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.3e-23 114.4 286 34.6
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.6e-23 114.0 283 34.6
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 2.1e-23 113.6 287 35.2
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.1e-23 113.6 285 34.7
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 3.7e-23 112.8 280 37.1
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 4.8e-23 112.5 288 35.8
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 8.1e-23 111.7 131 54.2
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.1e-23 111.7 120 56.7
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 8.1e-23 111.7 114 57.9
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-22 111.3 135 55.6
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.8e-22 110.5 289 34.6
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 2.4e-22 110.2 149 52.3
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.4e-22 110.2 115 57.4
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.1e-22 109.8 291 34.4
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 5.3e-22 109.0 247 37.7
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 6.9e-22 108.6 285 35.8
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 9.0e-22 108.2 280 35.0
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 2.0e-21 107.1 119 51.3
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.9e-20 103.2 129 48.8
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.4e-19 100.9 265 32.1
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.4e-19 100.9 67 83.6
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.2e-18 97.8 144 44.4
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 3.5e-18 96.3 115 54.8
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 7.9e-18 95.1 212 36.3
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.5e-13 80.9 124 39.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 7.6e-13 78.6 227 34.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.9e-12 76.6 115 40.0
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.1e-11 74.7 282 29.1
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.4e-11 74.3 123 40.7
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.5e-10 69.7 83 50.6
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.1e-08 64.7 125 34.4
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 6.3e-07 58.9 133 33.1


User provided reference genes

Program Settings