Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 4.7e-67 257.7 127 100.0
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 4.7e-67 257.7 127 100.0
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 4.7e-67 257.7 127 100.0
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.4e-66 256.1 127 99.2
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 5.2e-66 254.2 127 99.2
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 3.2e-63 245.0 127 95.3
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 4.1e-63 244.6 127 95.3
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 4.1e-63 244.6 127 95.3
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 4.1e-63 244.6 127 95.3
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 5.4e-63 244.2 127 95.3
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 1.0e-61 240.0 126 92.9
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 7.3e-60 233.8 127 89.8
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 6.2e-59 230.7 127 88.2
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.1e-58 229.9 127 87.4
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 2.6e-57 225.3 124 87.9
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 9.2e-55 216.9 120 86.7
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.3e-53 212.2 123 84.6
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 4.3e-52 208.0 126 77.8
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 9.6e-52 206.8 124 79.0
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 8.1e-51 203.8 126 77.8
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 8.1e-51 203.8 126 77.8
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.1e-50 203.4 126 75.4
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.1e-50 203.4 126 75.4
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.4e-50 203.0 118 79.7
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 2.4e-50 202.2 118 77.1
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.4e-50 202.2 118 79.7
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 2.4e-50 202.2 118 79.7
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.4e-50 202.2 118 83.1
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.4e-50 202.2 118 83.1
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 3.1e-50 201.8 116 79.3
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 4.0e-50 201.4 115 83.5
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 4.0e-50 201.4 126 77.8
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 5.2e-50 201.1 126 74.6
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.2e-49 199.9 124 77.4
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 2.6e-49 198.7 126 75.4
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 2.6e-49 198.7 126 72.2
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.6e-49 198.7 120 77.5
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 3.4e-49 198.4 120 75.8
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 3.4e-49 198.4 126 72.2
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 5.8e-49 197.6 114 82.5
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 7.6e-49 197.2 126 74.6
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 1.3e-48 196.4 119 74.8
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.7e-48 196.1 126 73.0
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.7e-48 196.1 126 74.6
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 3.8e-48 194.9 116 77.6
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 4.9e-48 194.5 126 73.0
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 6.4e-48 194.1 126 73.0
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 6.4e-48 194.1 126 73.8
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 6.4e-48 194.1 126 73.8
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 6.4e-48 194.1 126 73.8
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 8.4e-48 193.7 119 74.8
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 2.4e-47 192.2 119 76.5
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 2.4e-47 192.2 126 73.0
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 2.4e-47 192.2 126 73.0
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.2e-46 189.9 124 70.2
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.2e-46 189.9 118 74.6
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 1.6e-46 189.5 125 72.8
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 3.5e-46 188.3 122 73.0
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 3.5e-46 188.3 122 73.0
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 3.5e-46 188.3 116 76.7
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 6.0e-46 187.6 116 75.0
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 6.0e-46 187.6 120 74.2
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 7.8e-46 187.2 126 69.8
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 7.8e-46 187.2 120 74.2
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.0e-45 186.8 148 62.8
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.0e-45 186.8 126 69.8
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.0e-45 186.8 126 68.3
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.3e-45 186.4 118 73.7
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.3e-45 186.4 126 68.3
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 1.3e-45 186.4 114 75.4
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 1.3e-45 186.4 114 75.4
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.7e-45 186.0 126 68.3
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 2.3e-45 185.7 120 73.3
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 2.3e-45 185.7 113 76.1
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 8.7e-45 183.7 123 71.5
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 1.9e-44 182.6 114 73.7
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.9e-44 182.6 126 69.8
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 7.3e-44 180.6 140 63.6
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 9.6e-44 180.3 118 70.3
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.3e-43 179.9 117 70.1
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.6e-43 179.5 119 72.3
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.6e-43 179.5 119 72.3
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 1.6e-43 179.5 115 69.6
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.1e-43 179.1 118 73.7
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.1e-43 179.1 118 73.7
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 2.8e-43 178.7 118 72.0
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 3.6e-43 178.3 117 70.1
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 4.8e-43 177.9 118 72.9
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.8e-43 177.9 118 72.9
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 4.8e-43 177.9 117 69.2
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 6.2e-43 177.6 110 71.8
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.1e-42 176.8 117 71.8
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 1.4e-42 176.4 117 70.1
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 4.0e-42 174.9 117 69.2
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 6.9e-42 174.1 116 70.7
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 6.9e-42 174.1 142 59.2
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 9.0e-42 173.7 122 68.0
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 1.2e-41 173.3 150 59.3
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.0e-41 172.6 118 71.2
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 2.6e-41 172.2 125 66.4
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 4.5e-41 171.4 106 71.7
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 9.9e-41 170.2 111 68.5
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 9.9e-41 170.2 110 68.2
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 1.7e-40 169.5 116 66.4
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.7e-40 169.5 107 69.2
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 1.4e-39 166.4 113 71.7
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 2.5e-36 155.6 84 94.0
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 5.1e-29 131.3 68 91.2
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 9.0e-26 120.6 72 70.8
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 3.4e-25 118.6 85 68.2
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 7.6e-25 117.5 68 75.0
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.0e-24 117.1 68 73.5
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 1.3e-24 116.7 59 96.6
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 1.3e-24 116.7 66 75.8
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.8e-24 115.2 73 69.9
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 7.1e-23 110.9 57 94.7
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.2e-22 110.2 60 81.7
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 2.1e-22 109.4 112 45.5
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 7.9e-22 107.5 112 46.4
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 1.0e-21 107.1 66 69.7
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.0e-21 107.1 112 44.6
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.3e-21 106.7 75 62.7
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 8.7e-21 104.0 66 65.2
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 2.5e-20 102.4 69 76.8
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 4.3e-20 101.7 52 96.2
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 4.3e-20 101.7 77 58.4
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 1.6e-19 99.8 69 73.9
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 1.1e-18 97.1 114 42.1
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 2.6e-17 92.4 78 62.8
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 7.6e-17 90.9 58 75.9
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 1.3e-16 90.1 45 95.6
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 1.3e-16 90.1 59 76.3
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 6.5e-16 87.8 108 46.3
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 6.5e-16 87.8 59 72.9
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 1.4e-15 86.7 71 57.7
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.5e-15 85.9 57 71.9
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 3.6e-14 82.0 61 65.6
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 3.0e-13 79.0 69 53.6
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 3.9e-13 78.6 127 34.6
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 7.4e-12 74.3 93 46.2
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 3.4e-09 65.5 45 64.4


User provided reference genes

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