Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45267 Brassica carinata HOM05D000257 ORTHO05D009070 1.7e-64 249.2 127 100.0
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 1.7e-48 196.1 116 85.3
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 3.8e-48 194.9 116 85.3
BcaC07g40788 Brassica carinata HOM05D000257 ORTHO05D009070 8.4e-48 193.7 116 84.5
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 1.9e-47 192.6 116 85.3
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 1.9e-47 192.6 116 85.3
BcaC08g45260 Brassica carinata HOM05D000257 ORTHO05D009070 7.1e-47 190.7 105 91.4
AT3G63090 Arabidopsis thaliana HOM05D000257 ORTHO05D009070 1.2e-46 189.9 105 90.5
Sp5g00440 Schrenkiella parvula HOM05D000257 ORTHO05D009070 2.3e-45 185.7 105 89.5
C06p28610 Brassica napus HOM05D000257 ORTHO05D009070 1.9e-44 182.6 94 96.8
Thhalv10006016m.g Eutrema salsugineum HOM05D000257 ORTHO05D009070 9.6e-44 180.3 106 86.8
AL5G45920 Arabidopsis lyrata HOM05D000257 ORTHO05D009070 1.6e-43 179.5 105 88.6
CARHR173400 Cardamine hirsuta HOM05D000257 ORTHO05D009070 2.1e-43 179.1 105 88.6
Carub.0005s2975 Capsella rubella HOM05D000257 ORTHO05D009070 2.8e-43 178.7 105 85.7
Aa31LG10G16930 Aethionema arabicum HOM05D000257 ORTHO05D009070 4.8e-43 177.9 105 85.7
BolC6t38029H Brassica oleracea HOM05D000257 ORTHO05D009070 1.7e-40 169.5 89 96.6
THA.LOC104817550 Tarenaya hassleriana HOM05D000257 ORTHO05D009070 1.1e-39 166.8 105 80.0
Eucgr.B03977 Eucalyptus grandis HOM05D000257 ORTHO05D009070 4.3e-36 154.8 105 71.4
COL.COLO4_15662 Corchorus olitorius HOM05D000257 ORTHO05D009070 1.3e-35 153.3 103 73.8
CsaV3_7G028630 Cucumis sativus L. HOM05D000257 ORTHO05D009070 1.6e-35 152.9 105 73.3
Phvul.007G169900 Phaseolus vulgaris HOM05D000257 ORTHO05D009070 3.7e-35 151.8 105 70.5
TWI14G0398 Tripterygium wilfordii HOM05D000257 ORTHO05D009070 4.8e-35 151.4 106 68.9
Glyma.10G025100 Glycine max HOM05D000257 ORTHO05D009070 6.2e-35 151.0 120 63.3
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 6.2e-35 151.0 103 72.8
Manes.05G074100 Manihot esculenta HOM05D000257 ORTHO05D009070 6.2e-35 151.0 103 71.8
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.1e-34 150.2 105 69.5
Sed0001813 Sechium edule HOM05D000257 ORTHO05D009070 1.1e-34 150.2 105 69.5
MELO3C015855.2 Cucumis melo HOM05D000257 ORTHO05D009070 1.8e-34 149.4 105 71.4
MD03G1268200 Malus domestica HOM05D000257 ORTHO05D009070 1.8e-34 149.4 103 71.8
Thecc.01G223800 Theobroma cacao HOM05D000257 ORTHO05D009070 1.8e-34 149.4 103 69.9
VMungo0720G1308 Vigna mungo HOM05D000257 ORTHO05D009070 1.8e-34 149.4 105 69.5
Duzib138G1860 Durio zibethinus HOM05D000257 ORTHO05D009070 4.0e-34 148.3 103 69.9
FvH4_2g23842 Fragaria vesca HOM05D000257 ORTHO05D009070 9.0e-34 147.1 103 71.8
RcHm_v2.0_Chr6g0291451 Rosa chinensis HOM05D000257 ORTHO05D009070 9.0e-34 147.1 103 71.8
TAR362G1035 Trochodendron aralioides HOM05D000257 ORTHO05D009070 9.0e-34 147.1 115 66.1
CANSAT35G0265 Cannabis sativa HOM05D000257 ORTHO05D009070 1.5e-33 146.4 103 68.9
CAN.G609.8 Capsicum annuum HOM05D000257 ORTHO05D009070 1.5e-33 146.4 107 64.5
Peaxi162Scf00570g00044 Petunia axillaris HOM05D000257 ORTHO05D009070 1.5e-33 146.4 103 68.9
FAN24G1533 Fragaria x ananassa HOM05D000257 ORTHO05D009070 2.0e-33 146.0 103 70.9
FAN27G3161 Fragaria x ananassa HOM05D000257 ORTHO05D009070 2.0e-33 146.0 103 70.9
Gohir.A07G157500 Gossypium hirsutum HOM05D000257 ORTHO05D009070 2.6e-33 145.6 103 69.9
PGR054G0001 Punica granatum HOM05D000257 ORTHO05D009070 3.4e-33 145.2 103 68.9
PGR119G1369 Punica granatum HOM05D000257 ORTHO05D009070 3.4e-33 145.2 103 68.9
Ciclev10020353m.g Citrus clementina HOM05D000257 ORTHO05D009070 4.5e-33 144.8 103 70.9
Prupe.8G243800 Prunus persica HOM05D000257 ORTHO05D009070 4.5e-33 144.8 102 68.6
DCAR_002747 Daucus carota HOM05D000257 ORTHO05D009070 5.8e-33 144.4 125 61.6
Dinv32956 Davidia involucrata HOM05D000257 ORTHO05D009070 5.8e-33 144.4 113 67.3
Lsat_1_v5_gn_8_55920 Lactuca sativa HOM05D000257 ORTHO05D009070 5.8e-33 144.4 122 60.7
Nitab4.5_0001028g0200 Nicotiana tabacum HOM05D000257 ORTHO05D009070 5.8e-33 144.4 101 69.3
QL12p022373 Quercus lobata HOM05D000257 ORTHO05D009070 5.8e-33 144.4 103 69.9
Aqoxy5G00676 Aquilegia oxysepala HOM05D000257 ORTHO05D009070 9.9e-33 143.7 103 69.9
CiPaw.07G093700 Carya illinoinensis HOM05D000257 ORTHO05D009070 9.9e-33 143.7 103 67.0
PGSC0003DMG400000949 Solanum tuberosum HOM05D000257 ORTHO05D009070 9.9e-33 143.7 107 65.4
vmacro06860 Vaccinium macrocarpon HOM05D000257 ORTHO05D009070 9.9e-33 143.7 116 62.9
HanXRQChr01g0008411 Helianthus annuus HOM05D000257 ORTHO05D009070 1.3e-32 143.3 123 61.0
Lj5g0019479 Lotus japonicus HOM05D000257 ORTHO05D009070 1.3e-32 143.3 105 66.7
Nitab4.5_0002386g0010 Nicotiana tabacum HOM05D000257 ORTHO05D009070 2.2e-32 142.5 103 68.9
Oeu028080.1 Olea europaea HOM05D000257 ORTHO05D009070 2.2e-32 142.5 103 68.9
Psat6g061080 Pisum sativum HOM05D000257 ORTHO05D009070 2.2e-32 142.5 105 66.7
Potri.002G220000 Populus trichocarpa HOM05D000257 ORTHO05D009070 2.2e-32 142.5 103 66.0
Sabra02G0167500 Salix brachista HOM05D000257 ORTHO05D009070 2.2e-32 142.5 103 67.0
Sopen09g026590 Solanum pennellii HOM05D000257 ORTHO05D009070 2.2e-32 142.5 107 64.5
TPR.G1576 Trifolium pratense HOM05D000257 ORTHO05D009070 3.8e-32 141.7 114 62.3
unitig_61.g26328 Utricularia gibba HOM05D000257 ORTHO05D009070 6.4e-32 141.0 102 68.6
Medtr1g072550 Medicago truncatula HOM05D000257 ORTHO05D009070 8.4e-32 140.6 114 61.4
Atru.chr5.1382 Acer truncatum HOM05D000257 ORTHO05D009070 1.1e-31 140.2 101 70.3
ECA236G1390 Erigeron canadensis HOM05D000257 ORTHO05D009070 1.1e-31 140.2 119 61.3
Ca_09770_v3 Cicer arietinum L. HOM05D000257 ORTHO05D009070 1.9e-31 139.4 105 65.7
Gohir.D07G163900 Gossypium hirsutum HOM05D000257 ORTHO05D009070 1.9e-31 139.4 103 67.0
Gorai.001G187800 Gossypium raimondii HOM05D000257 ORTHO05D009070 1.9e-31 139.4 103 67.0
Hma1.2p1_0628F.1_g191960 Hydrangea macrophylla HOM05D000257 ORTHO05D009070 1.9e-31 139.4 103 67.0
Nn1g02126 Nelumbo nucifera HOM05D000257 ORTHO05D009070 1.9e-31 139.4 119 60.5
FAN15G1925 Fragaria x ananassa HOM05D000257 ORTHO05D009070 2.4e-31 139.0 103 68.0
FAN15G3545 Fragaria x ananassa HOM05D000257 ORTHO05D009070 2.4e-31 139.0 103 68.0
SalBow4G1415 Salvia bowleyana HOM05D000257 ORTHO05D009070 3.2e-31 138.7 102 65.7
CSS0034320 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D009070 5.5e-31 137.9 103 67.0
SHI15488 Sapria himalayana HOM05D000257 ORTHO05D009070 5.5e-31 137.9 103 66.0
Actinidia09151 Actinidia chinensis HOM05D000257 ORTHO05D009070 7.1e-31 137.5 122 59.0
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 7.1e-31 137.5 105 63.8
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 7.1e-31 137.5 105 63.8
Medtr1g032040 Medicago truncatula HOM05D000257 ORTHO05D009070 7.1e-31 137.5 105 64.8
Medtr1g032380 Medicago truncatula HOM05D000257 ORTHO05D009070 7.1e-31 137.5 105 64.8
PSO384G1280 Papaver somniferum HOM05D000257 ORTHO05D009070 9.3e-31 137.1 124 58.9
AUR62036811 Chenopodium quinoa HOM05D000257 ORTHO05D009070 1.2e-30 136.7 101 65.3
Ah.08g213010 Amaranthus hybridus HOM05D000257 ORTHO05D009070 1.6e-30 136.3 103 65.0
Migut.D00271 Erythranthe guttata HOM05D000257 ORTHO05D009070 2.7e-30 135.6 102 64.7
MBI19_g04668_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D009070 3.5e-30 135.2 103 65.0
Sc24g0004140 Simmondsia chinensis HOM05D000257 ORTHO05D009070 4.6e-30 134.8 103 62.1
SGA_v2.0_scaffold1G00454 Striga asiatica HOM05D000257 ORTHO05D009070 4.6e-30 134.8 102 61.8
Cfa006113 Carpinus fangiana HOM05D000257 ORTHO05D009070 6.0e-30 134.4 103 66.0
vmacro02554 Vaccinium macrocarpon HOM05D000257 ORTHO05D009070 6.0e-30 134.4 119 60.5
AUR62039897 Chenopodium quinoa HOM05D000257 ORTHO05D009070 7.9e-30 134.0 101 65.3
Haze_04737 Corylus avellana HOM05D000257 ORTHO05D009070 1.0e-29 133.7 103 65.0
PSO339G2340 Papaver somniferum HOM05D000257 ORTHO05D009070 8.7e-29 130.6 124 57.3
ATR0994G012 Amborella trichopoda HOM05D000257 ORTHO05D009070 5.6e-28 127.9 103 62.1
EL10Ac7g17211 Beta vulgaris HOM05D000257 ORTHO05D009070 2.8e-27 125.6 112 58.0
SEGI_00945 Sequoiadendron giganteum HOM05D000257 ORTHO05D009070 9.0e-26 120.6 103 58.3
Os01g0293200 Oryza sativa ssp. japonica HOM05D000257 ORTHO05D009070 3.3e-12 75.5 105 42.9
Zm00001eb066600 Zea mays HOM05D000257 ORTHO05D009070 3.7e-11 72.0 105 41.0
Solyc09g064890.4 Solanum lycopersicum HOM05D000257 ORTHO05D009070 1.0e-08 63.9 44 70.5
Lalb_Chr02g0142851 Lupinus albus HOM05D000257 ORTHO05D009070 2.9e-08 62.4 50 48.0
HanXRQChr03g0063811 Helianthus annuus HOM05D000257 ORTHO05D009070 6.1e-06 54.7 45 48.9
CDE02G4780 Ceratophyllum demersum HOM05D000328 ORTHO05D009070 7.9e-06 54.3 37 67.6


User provided reference genes

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