Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.7e-218 762.3 362 100.0
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.7e-218 762.3 362 100.0
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 5.4e-217 757.3 362 99.4
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.9e-214 748.8 362 98.1
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.6e-213 745.7 362 97.8
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.4e-212 742.7 362 97.0
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 9.9e-203 709.9 362 91.4
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 2.9e-202 708.4 362 92.0
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 5.4e-201 704.1 362 90.3
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.6e-200 702.6 362 90.3
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 6.0e-200 700.7 363 90.9
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 5.1e-199 697.6 362 90.1
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.4e-185 652.9 359 81.9
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.4e-156 556.6 359 69.6
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 5.3e-156 554.7 362 69.9
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 5.3e-156 554.7 363 70.5
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 7.0e-156 554.3 363 70.8
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.0e-154 550.4 362 69.3
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 3.8e-154 548.5 362 69.1
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 2.5e-153 545.8 361 69.8
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 2.7e-152 542.3 361 70.1
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 3.6e-152 542.0 361 70.4
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 4.7e-152 541.6 360 69.2
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 6.1e-152 541.2 359 69.9
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 8.0e-152 540.8 364 67.3
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.0e-151 538.9 364 68.4
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 4.0e-151 538.5 366 68.0
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.0e-151 538.5 360 69.4
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 4.0e-151 538.5 359 69.9
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 6.7e-151 537.7 359 67.4
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 6.7e-151 537.7 357 67.5
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 8.8e-151 537.3 356 69.9
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.5e-150 536.6 359 68.0
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.5e-150 536.6 342 71.6
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 2.0e-150 536.2 350 70.0
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.0e-150 536.2 352 69.0
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 2.0e-150 536.2 342 70.8
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 2.6e-150 535.8 360 68.1
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.6e-150 535.8 368 66.0
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.7e-150 534.6 356 68.5
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 9.7e-150 533.9 364 66.8
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 6.3e-149 531.2 364 66.2
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 8.2e-149 530.8 356 65.7
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.4e-148 530.0 342 70.5
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.4e-148 530.0 364 66.8
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.4e-148 530.0 360 66.7
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 3.1e-148 528.9 363 67.5
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 2.0e-147 526.2 358 66.5
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 7.7e-147 524.2 357 65.8
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 7.7e-147 524.2 351 69.2
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.7e-146 523.1 355 66.2
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 2.9e-146 522.3 363 66.4
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.9e-146 522.3 353 67.4
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 3.8e-146 521.9 361 66.5
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 8.5e-146 520.8 360 65.6
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.1e-145 520.4 360 64.2
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.5e-145 519.2 349 67.9
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 4.2e-145 518.5 355 69.0
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.2e-145 517.7 357 63.9
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 9.4e-145 517.3 360 64.4
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 2.3e-143 512.7 311 74.6
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 8.8e-143 510.8 356 64.0
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 5.7e-142 508.1 343 65.3
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.3e-141 506.9 312 70.2
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.7e-141 506.5 360 64.4
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 8.3e-141 504.2 361 65.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 8.3e-141 504.2 366 63.9
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.4e-140 503.4 359 63.2
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 2.4e-140 502.7 324 69.1
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 3.1e-140 502.3 323 69.3
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 4.1e-140 501.9 360 63.9
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 5.4e-140 501.5 360 63.1
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 5.4e-140 501.5 323 69.3
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 5.4e-140 501.5 363 63.6
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 7.0e-140 501.1 323 69.3
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 7.0e-140 501.1 359 63.0
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.0e-139 499.6 359 63.2
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.0e-139 499.6 267 83.5
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 3.5e-139 498.8 342 66.1
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.0e-138 497.3 353 63.2
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 5.0e-138 495.0 359 64.1
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 6.5e-138 494.6 359 61.8
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 5.2e-135 485.0 357 63.0
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 9.8e-134 480.7 344 62.8
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 9.8e-134 480.7 357 61.3
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.3e-133 480.3 351 62.7
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.2e-133 479.6 343 63.0
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 2.8e-133 479.2 444 51.6
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.9e-133 478.4 340 62.9
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 6.3e-133 478.0 354 61.6
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.4e-132 476.1 351 61.8
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 5.4e-132 474.9 342 63.2
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 9.2e-132 474.2 355 62.5
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 2.0e-131 473.0 362 61.0
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.3e-130 470.3 451 51.0
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.9e-130 469.2 354 60.5
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 5.0e-130 468.4 394 57.1
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.6e-130 468.0 362 62.2
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 6.6e-130 468.0 362 62.2
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 8.6e-130 467.6 355 63.4
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 8.6e-130 467.6 352 63.6
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.1e-129 467.2 361 59.0
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 3.3e-129 465.7 364 62.4
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 3.4e-126 455.7 355 58.0
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 6.4e-125 451.4 358 57.3
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 5.0e-122 441.8 331 59.8
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.3e-121 439.1 361 56.0
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 4.3e-121 438.7 280 69.6
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 9.5e-121 437.6 280 69.3
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 8.0e-120 434.5 280 68.9
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.8e-119 433.3 358 55.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 4.6e-115 418.7 358 55.9
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 3.9e-114 415.6 313 59.7
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 8.9e-111 404.4 270 68.5
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.2e-108 396.0 262 65.6
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.3e-106 390.6 337 53.7
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 2.0e-102 376.7 289 58.1
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.8e-101 372.5 229 73.4
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.8e-99 364.8 255 66.3
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.9e-97 360.1 320 55.0
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 3.1e-95 352.8 357 47.6
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.4e-92 342.0 202 75.7
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.5e-89 334.0 229 64.6
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 5.3e-87 325.5 264 58.3
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 9.9e-86 321.2 357 45.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.7e-85 320.5 216 66.2
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 2.9e-85 319.7 362 44.2
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.1e-84 317.8 231 60.2
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 8.7e-82 308.1 362 43.9
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.1e-81 307.8 300 51.0
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.7e-77 293.9 316 47.2
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.7e-77 293.9 202 67.8
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.9e-77 292.4 184 73.9
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.7e-75 286.6 209 65.6
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 8.7e-74 281.6 192 66.7
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.0e-58 231.5 240 48.3
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-55 221.5 155 66.5
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 6.9e-55 218.8 158 62.0
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 7.7e-38 162.2 143 53.1
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 6.1e-35 152.5 217 37.8
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 4.5e-30 136.3 108 58.3
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.5e-28 130.6 109 59.6
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.8e-23 114.4 98 56.1
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.2e-22 111.7 102 48.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 3.6e-19 100.1 98 48.0
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.3e-13 81.6 122 33.6
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 8.3e-08 62.4 130 31.5


User provided reference genes

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