Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45167 Brassica carinata HOM05D006438 ORTHO05D007998 6.2e-166 587.4 301 100.0
BolC6t37959H Brassica oleracea HOM05D006438 ORTHO05D007998 1.1e-125 453.8 237 98.7
C06p27980 Brassica napus HOM05D006438 ORTHO05D007998 2.4e-125 452.6 237 98.3
BcaC08g45166 Brassica carinata HOM05D006438 ORTHO05D007998 3.3e-119 432.2 243 93.4
BraA07t30216Z Brassica rapa HOM05D006438 ORTHO05D007998 1.1e-114 417.2 243 92.2
A07p25760 Brassica napus HOM05D006438 ORTHO05D007998 3.2e-114 415.6 243 91.8
Sp5g01570 Schrenkiella parvula HOM05D006438 ORTHO05D007998 7.7e-108 394.4 241 87.1
Thhalv10005821m.g Eutrema salsugineum HOM05D006438 ORTHO05D007998 3.8e-107 392.1 241 87.6
AL5G44360 Arabidopsis lyrata HOM05D006438 ORTHO05D007998 4.4e-95 352.1 241 80.9
AT3G61800 Arabidopsis thaliana HOM05D006438 ORTHO05D007998 4.1e-93 345.5 241 78.0
Carub.0005s2854 Capsella rubella HOM05D006438 ORTHO05D007998 1.7e-91 340.1 242 78.5
CARHR172130 Cardamine hirsuta HOM05D006438 ORTHO05D007998 3.2e-90 335.9 241 75.1
THA.LOC104817364 Tarenaya hassleriana HOM05D006438 ORTHO05D007998 1.1e-74 284.3 240 63.8
Aa31LG10G15790 Aethionema arabicum HOM05D006438 ORTHO05D007998 3.6e-73 279.3 239 65.3
C08p42400 Brassica napus HOM05D006438 ORTHO05D007998 1.2e-65 254.2 245 60.8
BraA06t25827Z Brassica rapa HOM05D006438 ORTHO05D007998 1.2e-65 254.2 245 60.8
RcHm_v2.0_Chr1g0359811 Rosa chinensis HOM05D006438 ORTHO05D007998 3.5e-60 236.1 253 56.1
Hund27192 Selenicereus undatus HOM05D006438 ORTHO05D007998 4.6e-60 235.7 250 54.0
Atru.chr5.675 Acer truncatum HOM05D006438 ORTHO05D007998 1.5e-58 230.7 248 54.4
FAN03G1123 Fragaria x ananassa HOM05D006438 ORTHO05D007998 1.9e-58 230.3 254 54.7
FvH4_7g16650 Fragaria vesca HOM05D006438 ORTHO05D007998 3.3e-58 229.6 254 54.3
FAN10G0107 Fragaria x ananassa HOM05D006438 ORTHO05D007998 1.6e-57 227.3 254 53.9
Ciclev10019221m.g Citrus clementina HOM05D006438 ORTHO05D007998 2.1e-57 226.9 244 54.9
FAN01G1234 Fragaria x ananassa HOM05D006438 ORTHO05D007998 2.1e-57 226.9 254 53.5
Duzib138G1266 Durio zibethinus HOM05D006438 ORTHO05D007998 2.8e-57 226.5 248 52.8
Lj7A500T115 Lonicera japonica HOM05D006438 ORTHO05D007998 3.6e-57 226.1 245 54.7
Sabra14G0072800 Salix brachista HOM05D006438 ORTHO05D007998 3.6e-57 226.1 249 53.8
Sc23g0002070 Simmondsia chinensis HOM05D006438 ORTHO05D007998 4.7e-57 225.7 259 51.0
COL.COLO4_06280 Corchorus olitorius HOM05D006438 ORTHO05D007998 6.2e-57 225.3 244 53.3
Haze_15664 Corylus avellana HOM05D006438 ORTHO05D007998 6.2e-57 225.3 245 54.3
Dinv32596 Davidia involucrata HOM05D006438 ORTHO05D007998 6.2e-57 225.3 245 54.7
CSS0017951 Camellia sinensis var. sinensis HOM05D006438 ORTHO05D007998 8.0e-57 224.9 245 55.1
CSS0029538 Camellia sinensis var. sinensis HOM05D006438 ORTHO05D007998 1.4e-56 224.2 245 54.3
Potri.014G099300 Populus trichocarpa HOM05D006438 ORTHO05D007998 1.4e-56 224.2 244 52.9
GSVIVG01027157001 Vitis vinifera HOM05D006438 ORTHO05D007998 1.4e-56 224.2 245 53.1
Cfa003796 Carpinus fangiana HOM05D006438 ORTHO05D007998 2.3e-56 223.4 245 54.3
Prupe.2G189300 Prunus persica HOM05D006438 ORTHO05D007998 3.1e-56 223.0 254 52.4
Thecc.01G341800 Theobroma cacao HOM05D006438 ORTHO05D007998 3.1e-56 223.0 243 53.9
Actinidia20246 Actinidia chinensis HOM05D006438 ORTHO05D007998 4.0e-56 222.6 245 52.7
FAN10G3447 Fragaria x ananassa HOM05D006438 ORTHO05D007998 4.0e-56 222.6 252 53.6
Ah.05g179490 Amaranthus hybridus HOM05D006438 ORTHO05D007998 1.2e-55 221.1 247 53.0
Manes.13G078900 Manihot esculenta HOM05D006438 ORTHO05D007998 2.0e-55 220.3 244 52.9
CANSAT56G2224 Cannabis sativa HOM05D006438 ORTHO05D007998 2.6e-55 219.9 242 52.1
Manes.13G077643 Manihot esculenta HOM05D006438 ORTHO05D007998 2.6e-55 219.9 244 52.5
QL06p050047 Quercus lobata HOM05D006438 ORTHO05D007998 5.8e-55 218.8 247 52.6
Rhsim07G0003900 Rhododendron simsii HOM05D006438 ORTHO05D007998 5.8e-55 218.8 242 50.4
Glyma.19G256300 Glycine max HOM05D006438 ORTHO05D007998 7.5e-55 218.4 245 53.5
PSO170G3726 Papaver somniferum HOM05D006438 ORTHO05D007998 9.8e-55 218.0 245 51.0
CAN.G1415.26 Capsicum annuum HOM05D006438 ORTHO05D007998 1.3e-54 217.6 246 52.0
Potri.002G171600 Populus trichocarpa HOM05D006438 ORTHO05D007998 1.7e-54 217.2 245 53.1
VMungo0540G1767 Vigna mungo HOM05D006438 ORTHO05D007998 1.7e-54 217.2 245 53.1
CiPaw.02G041100 Carya illinoinensis HOM05D006438 ORTHO05D007998 2.2e-54 216.9 245 52.7
MD07G1150500 Malus domestica HOM05D006438 ORTHO05D007998 2.2e-54 216.9 245 51.4
vmacro13165 Vaccinium macrocarpon HOM05D006438 ORTHO05D007998 2.9e-54 216.5 242 50.4
Cpa.g.sc96.25 Carica papaya HOM05D006438 ORTHO05D007998 3.7e-54 216.1 245 52.2
QL11p022848 Quercus lobata HOM05D006438 ORTHO05D007998 4.9e-54 215.7 247 52.2
Gohir.A08G125100 Gossypium hirsutum HOM05D006438 ORTHO05D007998 6.4e-54 215.3 246 52.4
PGR031G2090 Punica granatum HOM05D006438 ORTHO05D007998 8.3e-54 214.9 245 53.5
Eucgr.A01924 Eucalyptus grandis HOM05D006438 ORTHO05D007998 1.1e-53 214.5 242 50.8
Phvul.006G113600 Phaseolus vulgaris HOM05D006438 ORTHO05D007998 1.9e-53 213.8 245 52.7
Lalb_Chr18g0044491 Lupinus albus HOM05D006438 ORTHO05D007998 2.4e-53 213.4 242 52.1
Glyma.03G257800 Glycine max HOM05D006438 ORTHO05D007998 4.1e-53 212.6 245 52.7
MD01G1082100 Malus domestica HOM05D006438 ORTHO05D007998 4.1e-53 212.6 254 50.4
EL10Ac1g00261 Beta vulgaris HOM05D006438 ORTHO05D007998 7.0e-53 211.8 257 49.8
Gohir.D08G146100 Gossypium hirsutum HOM05D006438 ORTHO05D007998 7.0e-53 211.8 295 46.4
SGA_v2.0_scaffold5G03022 Striga asiatica HOM05D006438 ORTHO05D007998 1.2e-52 211.1 247 49.0
MSTRG.17348 Avicennia marina HOM05D006438 ORTHO05D007998 1.6e-52 210.7 245 51.0
Gorai.004G151600 Gossypium raimondii HOM05D006438 ORTHO05D007998 2.1e-52 210.3 295 46.8
Sopen01g039750 Solanum pennellii HOM05D006438 ORTHO05D007998 2.1e-52 210.3 249 51.0
PGSC0003DMG400000230 Solanum tuberosum HOM05D006438 ORTHO05D007998 2.1e-52 210.3 249 51.4
Lj1g0004073 Lotus japonicus HOM05D006438 ORTHO05D007998 2.7e-52 209.9 245 51.4
PSO063G1116 Papaver somniferum HOM05D006438 ORTHO05D007998 6.0e-52 208.8 247 51.0
Solyc01g096030.4 Solanum lycopersicum HOM05D006438 ORTHO05D007998 1.0e-51 208.0 249 51.0
Migut.B01878 Erythranthe guttata HOM05D006438 ORTHO05D007998 1.3e-51 207.6 257 49.4
Aqoxy5G04279 Aquilegia oxysepala HOM05D006438 ORTHO05D007998 3.0e-51 206.5 237 53.2
ATR0602G124 Amborella trichopoda HOM05D006438 ORTHO05D007998 3.9e-51 206.1 256 52.3
Nn3g18981 Nelumbo nucifera HOM05D006438 ORTHO05D007998 6.6e-51 205.3 243 50.2
ClCG06G001260 Citrullus lanatus HOM05D006438 ORTHO05D007998 8.6e-51 204.9 245 49.0
CsaV3_6G007190 Cucumis sativus L. HOM05D006438 ORTHO05D007998 2.5e-50 203.4 245 48.2
AUR62023453 Chenopodium quinoa HOM05D006438 ORTHO05D007998 3.3e-50 203.0 250 47.6
MELO3C022408.2 Cucumis melo HOM05D006438 ORTHO05D007998 3.3e-50 203.0 245 48.2
SalBow3G2635 Salvia bowleyana HOM05D006438 ORTHO05D007998 4.3e-50 202.6 245 49.0
Ca_09510_v3 Cicer arietinum L. HOM05D006438 ORTHO05D007998 1.2e-49 201.1 243 52.3
Ca_30059_v3 Cicer arietinum L. HOM05D006438 ORTHO05D007998 1.2e-49 201.1 243 52.3
DCAR_005393 Daucus carota HOM05D006438 ORTHO05D007998 1.6e-49 200.7 244 51.2
ECA236G2598 Erigeron canadensis HOM05D006438 ORTHO05D007998 1.6e-49 200.7 243 50.2
TWI59G0942 Tripterygium wilfordii HOM05D006438 ORTHO05D007998 2.8e-49 199.9 244 50.4
Nn1g00253 Nelumbo nucifera HOM05D006438 ORTHO05D007998 4.7e-49 199.1 245 49.8
Nitab4.5_0000172g0480 Nicotiana tabacum HOM05D006438 ORTHO05D007998 5.2e-48 195.7 246 47.6
Nitab4.5_0013402g0010 Nicotiana tabacum HOM05D006438 ORTHO05D007998 8.9e-48 194.9 249 47.8
AUR62004500 Chenopodium quinoa HOM05D006438 ORTHO05D007998 1.2e-47 194.5 234 47.4
arahy.Tifrunner.gnm1.ann1.QN4XTT Arachis hypogaea HOM05D006438 ORTHO05D007998 1.5e-47 194.1 218 48.2
arahy.Tifrunner.gnm1.ann1.TZA1ET Arachis hypogaea HOM05D006438 ORTHO05D007998 1.5e-47 194.1 218 48.2
Zm00001eb378420 Zea mays HOM05D006438 ORTHO05D007998 2.0e-47 193.7 271 46.5
TPR.G4682 Trifolium pratense HOM05D006438 ORTHO05D007998 2.6e-47 193.4 217 51.2
HanXRQChr04g0120541 Helianthus annuus HOM05D006438 ORTHO05D007998 4.4e-47 192.6 244 50.0
Psat3g002440 Pisum sativum HOM05D006438 ORTHO05D007998 9.9e-47 191.4 218 51.4
Sed0005284 Sechium edule HOM05D006438 ORTHO05D007998 1.7e-46 190.7 222 48.6
Peaxi162Scf00786g00012 Petunia axillaris HOM05D006438 ORTHO05D007998 2.4e-45 186.8 249 46.6
HPP92_008818 Vanilla planifolia HOM05D006438 ORTHO05D007998 4.1e-45 186.0 257 44.7
Medtr7g117420 Medicago truncatula HOM05D006438 ORTHO05D007998 7.1e-45 185.3 218 50.5
MBI07_g40678_MAGBIO Magnolia biondii HOM05D006438 ORTHO05D007998 2.7e-44 183.3 249 47.0
Lsat_1_v5_gn_7_1020 Lactuca sativa HOM05D006438 ORTHO05D007998 1.1e-42 177.9 242 48.8
Pp3c3_31410 Physcomitrium patens HOM05D006438 ORTHO05D007998 2.1e-41 173.7 253 42.7
unitig_37.g12626 Utricularia gibba HOM05D006438 ORTHO05D007998 4.7e-41 172.6 214 49.1
SEGI_11798 Sequoiadendron giganteum HOM05D006438 ORTHO05D007998 3.4e-39 166.4 267 40.1
Mapoly0002s0048 Marchantia polymorpha HOM05D006438 ORTHO05D007998 5.8e-39 165.6 251 41.4
SMO365G0083 Selaginella moellendorffii HOM05D006438 ORTHO05D007998 1.2e-33 147.9 238 37.8
Actinidia10144 Actinidia chinensis HOM05D006438 ORTHO05D007998 3.6e-33 146.4 80 77.5
Dinv35119 Davidia involucrata HOM05D006438 ORTHO05D007998 3.4e-31 139.8 245 39.6
AagrBONN_evm.TU.Sc2ySwM_368.299 Anthoceros agrestis HOM05D006438 ORTHO05D007998 5.8e-31 139.0 164 45.7
SEGI_17110 Sequoiadendron giganteum HOM05D006438 ORTHO05D007998 2.0e-23 114.0 101 53.5
Sabra02G0141200 Salix brachista HOM05D006438 ORTHO05D007998 5.1e-11 72.8 46 69.6
SEGI_37113 Sequoiadendron giganteum HOM05D006438 ORTHO05D007998 3.8e-06 56.6 37 56.8


User provided reference genes

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