Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45164 Brassica carinata HOM05D005676 ORTHO05D007375 0.0e+00 1785.8 925 100.0
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 0.0e+00 1511.9 989 82.6
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 0.0e+00 1510.4 989 82.6
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 0.0e+00 1498.4 989 82.1
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 0.0e+00 1498.4 989 82.1
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 0.0e+00 1474.5 989 81.8
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 0.0e+00 1356.3 1024 72.9
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 0.0e+00 1332.0 1030 71.8
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 0.0e+00 1316.6 1027 72.0
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 0.0e+00 1305.0 1018 71.6
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 0.0e+00 1257.3 1011 70.1
CARHR172110 Cardamine hirsuta HOM05D005676 ORTHO05D007375 0.0e+00 1151.3 949 71.0
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 2.2e-291 1005.7 1038 55.9
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 2.7e-289 998.8 946 59.7
AT5G28400 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 1.6e-257 893.3 850 63.5
AT5G28320 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 4.3e-210 735.7 821 57.6
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 4.5e-207 725.7 1034 43.9
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 1.7e-206 723.8 1035 44.3
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 1.1e-205 721.1 1035 44.1
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 2.5e-202 709.9 1054 43.5
Cpa.g.sc96.24 Carica papaya HOM05D005676 ORTHO05D007375 2.1e-201 706.8 1052 43.5
Manes.01G246200 Manihot esculenta HOM05D005676 ORTHO05D007375 1.3e-195 687.6 1000 44.1
Prupe.2G189000 Prunus persica HOM05D005676 ORTHO05D007375 1.7e-190 670.6 1052 41.9
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 1.9e-189 667.2 1017 42.5
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 1.9e-189 667.2 1049 42.5
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 3.2e-189 666.4 1060 42.2
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 9.3e-189 664.8 984 42.7
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.6e-188 662.5 1048 42.5
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 7.9e-188 661.8 951 44.4
Atru.chr5.673 Acer truncatum HOM05D005676 ORTHO05D007375 2.3e-187 660.2 1041 42.1
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.0e-187 659.8 1050 42.2
COL.COLO4_06282 Corchorus olitorius HOM05D005676 ORTHO05D007375 6.7e-187 658.7 991 43.7
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 8.7e-187 658.3 1013 42.4
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 3.3e-186 656.4 1113 40.1
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 4.3e-186 656.0 1014 41.7
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 4.3e-186 656.0 1117 39.6
Potri.014G099100 Populus trichocarpa HOM05D005676 ORTHO05D007375 7.4e-186 655.2 1049 42.3
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 8.2e-185 651.7 1042 42.0
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 8.2e-185 651.7 1041 42.4
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 8.2e-185 651.7 1002 42.7
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.1e-184 651.4 1047 41.8
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 5.3e-184 649.0 1114 40.2
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.4e-183 646.4 1042 41.7
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 1.7e-182 644.0 1098 40.3
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 1.7e-182 644.0 1054 41.6
Ciclev10023383m.g Citrus clementina HOM05D005676 ORTHO05D007375 7.2e-181 638.6 1008 42.6
Sabra14G0072700 Salix brachista HOM05D005676 ORTHO05D007375 3.6e-180 636.3 1035 41.5
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 4.6e-180 636.0 1128 38.5
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 7.9e-180 635.2 1188 37.8
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 2.3e-179 633.6 1039 39.7
Haze_15661 Corylus avellana HOM05D005676 ORTHO05D007375 3.9e-179 632.9 1059 40.4
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 2.8e-177 626.7 1035 40.5
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 6.3e-177 625.5 896 44.0
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 6.9e-176 622.1 1037 40.1
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 9.1e-176 621.7 976 41.4
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 1.4e-173 614.4 1057 39.5
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 1.9e-173 614.0 974 40.7
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 1.9e-173 614.0 1037 39.2
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.2e-172 611.3 1080 39.7
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 2.7e-172 610.1 1082 37.7
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 6.1e-172 609.0 1205 36.3
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 3.0e-171 606.7 1073 39.7
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 3.3e-170 603.2 1074 38.4
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 2.2e-169 600.5 929 43.3
Peaxi162Scf00786g00018 Petunia axillaris HOM05D005676 ORTHO05D007375 2.8e-169 600.1 1069 39.1
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 6.3e-169 599.0 1074 38.3
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 8.2e-169 598.6 1099 38.5
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 8.2e-169 598.6 1074 38.5
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 1.4e-168 597.8 1059 39.2
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 1.0e-166 591.7 1056 39.4
SGA_v2.0_scaffold5G03020 Striga asiatica HOM05D005676 ORTHO05D007375 8.5e-166 588.6 1004 39.8
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 7.2e-165 585.5 1254 35.4
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 9.4e-165 585.1 1133 37.0
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 9.4e-165 585.1 1036 38.3
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 9.4e-165 585.1 1229 35.7
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 3.6e-164 583.2 1218 35.7
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 2.6e-162 577.0 1255 35.6
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 7.0e-160 568.9 1093 37.9
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 3.2e-157 560.1 1254 35.1
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 8.0e-156 555.4 1072 38.5
CiPaw.02G041000 Carya illinoinensis HOM05D005676 ORTHO05D007375 8.8e-155 552.0 832 42.5
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 4.8e-153 546.2 994 38.1
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 1.3e-150 538.1 965 38.1
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 2.9e-150 537.0 1234 33.6
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 1.5e-149 534.6 1175 35.7
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 1.9e-149 534.3 821 42.8
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 9.5e-149 531.9 1241 33.4
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 4.7e-148 529.6 918 39.8
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 5.4e-136 489.6 857 39.0
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 9.5e-133 478.8 820 39.8
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 1.4e-131 474.9 443 56.0
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 1.9e-128 464.5 723 40.8
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 1.3e-126 458.4 794 39.4
ATR0602G016 Amborella trichopoda HOM05D005676 ORTHO05D007375 6.0e-119 433.0 1062 32.4
Gohir.D11G101600 Gossypium hirsutum HOM05D005676 ORTHO05D007375 6.2e-108 396.4 792 37.1
AL5G43810 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 1.6e-103 381.7 538 47.8
Glyma.07G055432 Glycine max HOM05D005676 ORTHO05D007375 4.5e-98 363.6 280 63.2
Gohir.D11G101550 Gossypium hirsutum HOM05D005676 ORTHO05D007375 3.2e-80 304.3 212 69.3
Actinidia20244 Actinidia chinensis HOM05D005676 ORTHO05D007375 3.4e-74 284.3 383 44.9
MD07G1150200 Malus domestica HOM05D005676 ORTHO05D007375 1.9e-56 225.3 455 36.7
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 7.2e-56 223.4 930 26.5
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 6.7e-54 216.9 367 37.1
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 2.0e-53 215.3 991 26.5
Oeu007893.1 Olea europaea HOM05D005676 ORTHO05D007375 1.2e-45 189.5 477 31.4
MBI06_g46582_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 4.9e-28 131.0 245 34.7
MD07G1150100 Malus domestica HOM05D005676 ORTHO05D007375 6.3e-28 130.6 77 74.0
FAN06G2271 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.1e-27 129.8 423 31.2
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 2.0e-21 109.0 325 28.6
FvH4_7g16530 Fragaria vesca HOM05D005676 ORTHO05D007375 5.8e-21 107.5 62 77.4
Glyma.07G055366 Glycine max HOM05D005676 ORTHO05D007375 5.8e-21 107.5 178 37.6
TPR.G23509 Trifolium pratense HOM05D005676 ORTHO05D007375 5.4e-19 100.9 129 45.0
CBR_g23443 Chara braunii HOM05D005676 ORTHO05D007375 2.7e-18 98.6 484 22.1
Aa31LG8G12350 Aethionema arabicum HOM05D005676 ORTHO05D007375 1.0e-17 96.7 112 53.6
FAN06G3424 Fragaria x ananassa HOM05D005676 ORTHO05D007375 8.6e-17 93.6 210 34.3
MD07G1150300 Malus domestica HOM05D005676 ORTHO05D007375 9.8e-13 80.1 158 35.4
FvH4_7g16560 Fragaria vesca HOM05D005676 ORTHO05D007375 6.4e-12 77.4 219 35.6
FAN06G1105 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.4e-11 76.3 219 35.6
FAN03G3457 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.6e-10 72.8 120 40.0
FAN03G0974 Fragaria x ananassa HOM05D005676 ORTHO05D007375 6.0e-10 70.9 192 33.9
FAN06G0289 Fragaria x ananassa HOM05D005676 ORTHO05D007375 5.1e-09 67.8 36 83.3
FvH4_7g16531 Fragaria vesca HOM05D005676 ORTHO05D007375 3.3e-08 65.1 108 46.3
SEGI_23790 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 4.7e-07 61.2 75 40.0
A06p02540 Brassica napus HOM05D005676 ORTHO05D040540 1.4e-06 59.7 77 54.5


User provided reference genes

Program Settings