Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 1.4e-303 1045.4 508 100.0
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 6.1e-299 1030.0 508 98.4
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 7.9e-299 1029.6 508 98.6
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 4.5e-294 1013.8 508 96.3
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 5.9e-294 1013.4 508 96.5
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 3.0e-282 974.5 516 92.2
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 1.5e-265 919.1 526 87.3
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 1.4e-255 885.9 526 83.5
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 7.0e-255 883.6 513 84.6
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 3.9e-253 877.9 523 83.6
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 3.9e-253 877.9 526 82.3
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 2.5e-244 848.6 455 89.5
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 1.5e-233 812.8 525 76.2
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 1.4e-226 789.6 495 76.8
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 1.3e-224 783.1 491 76.0
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 7.3e-220 767.3 517 71.8
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 1.3e-219 766.5 515 72.6
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 2.4e-218 762.3 490 74.1
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 2.4e-218 762.3 476 76.1
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 1.5e-217 759.6 518 71.4
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 1.5e-217 759.6 520 71.2
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 5.8e-217 757.7 522 69.5
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.7e-216 756.1 517 71.0
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 3.8e-216 755.0 506 70.9
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 6.4e-216 754.2 478 74.5
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 6.4e-216 754.2 513 73.3
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.1e-215 753.4 478 74.1
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 1.1e-215 753.4 517 70.6
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 1.1e-215 753.4 520 70.0
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 1.9e-215 752.7 493 72.6
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 3.2e-215 751.9 515 70.3
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 4.2e-215 751.5 486 72.8
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 9.3e-215 750.4 521 70.4
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 1.2e-214 750.0 481 77.3
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.1e-214 749.2 481 73.4
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 2.1e-214 749.2 473 75.9
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 2.1e-214 749.2 455 76.9
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 1.0e-213 746.9 491 72.3
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 1.8e-213 746.1 519 70.1
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 3.9e-213 745.0 515 71.7
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 5.1e-213 744.6 474 73.8
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 6.7e-213 744.2 521 68.7
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 6.7e-213 744.2 517 71.2
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 1.9e-212 742.7 517 71.0
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 1.9e-212 742.7 517 71.2
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 2.5e-212 742.3 512 70.1
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 5.6e-212 741.1 466 74.5
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 9.6e-212 740.3 493 72.0
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 1.6e-211 739.6 527 67.7
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.1e-211 739.2 474 74.5
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 3.7e-211 738.4 465 75.3
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 8.1e-211 737.3 474 75.1
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 8.1e-211 737.3 481 72.6
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 1.1e-210 736.9 462 74.5
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 1.8e-210 736.1 523 68.8
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.4e-210 735.7 507 69.8
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 2.4e-210 735.7 524 68.9
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 4.0e-210 734.9 456 75.7
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 5.3e-210 734.6 474 75.5
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 2.0e-209 732.6 455 74.9
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 2.0e-209 732.6 477 73.8
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 9.9e-209 730.3 504 69.6
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 6.4e-208 727.6 514 68.9
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 1.4e-207 726.5 487 71.7
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 1.4e-207 726.5 481 71.7
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 4.2e-207 724.9 534 67.8
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 7.1e-207 724.2 454 74.9
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 1.6e-206 723.0 484 71.9
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 2.1e-206 722.6 484 72.1
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 2.1e-206 722.6 469 72.9
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 2.7e-206 722.2 482 71.0
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 2.3e-205 719.2 448 75.0
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 6.7e-205 717.6 455 73.4
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 1.5e-204 716.5 453 74.2
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 2.5e-204 715.7 478 70.7
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 6.2e-203 711.1 463 71.7
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 6.2e-203 711.1 452 72.1
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 1.4e-202 709.9 481 69.4
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 1.4e-202 709.9 498 68.5
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 9.0e-202 707.2 464 72.2
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 2.2e-200 702.6 452 71.5
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 4.9e-200 701.4 495 67.5
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 1.4e-199 699.9 508 67.3
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 5.5e-199 698.0 470 71.9
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 2.1e-198 696.0 461 69.4
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 2.7e-198 695.7 515 65.2
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 7.9e-198 694.1 508 67.1
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 7.9e-198 694.1 453 72.0
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 2.5e-196 689.1 451 71.8
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 1.1e-194 683.7 510 64.3
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 1.2e-185 653.7 499 62.9
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 2.2e-184 649.4 457 67.6
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 1.4e-175 620.2 475 62.3
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 7.2e-175 617.8 447 63.1
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 4.7e-174 615.1 510 61.4
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 1.1e-172 610.5 454 66.3
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 1.8e-170 603.2 452 62.4
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 2.4e-170 602.8 498 59.8
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 4.5e-169 598.6 474 61.0
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 1.3e-168 597.0 366 77.3
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 1.3e-163 580.5 508 59.1
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 4.8e-163 578.6 421 67.5
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 1.2e-158 563.9 376 71.8
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 1.1e-130 471.1 326 68.1
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 9.2e-130 468.0 452 52.2
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 2.5e-127 459.9 478 53.3
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 3.8e-115 419.5 270 74.1
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 4.0e-109 399.4 475 46.3
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 9.0e-109 398.3 276 67.4
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 7.8e-105 385.2 463 46.4
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 3.7e-78 296.6 449 39.4
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 2.8e-38 164.1 100 73.0
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 6.3e-38 162.9 226 39.4
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 1.8e-32 144.8 110 61.8
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 1.8e-32 144.8 110 61.8
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 1.8e-32 144.8 110 61.8
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 3.0e-32 144.1 96 70.8
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 1.3e-30 138.7 72 86.1
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 2.3e-24 117.9 280 31.8
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 2.9e-22 110.9 60 83.3
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 4.9e-14 83.6 43 93.0
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 2.1e-09 68.2 98 48.0
BcaC08g45232 Brassica carinata HOM05D000289 ORTHO05D000208 8.1e-09 66.2 42 71.4
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 8.9e-08 62.8 41 75.6
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 3.4e-07 60.8 40 67.5


User provided reference genes

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