Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45110 Brassica carinata HOM05D007747 ORTHO05D009997 3.5e-38 161.0 74 100.0
C06p27200 Brassica napus HOM05D007747 ORTHO05D009997 3.5e-38 161.0 74 100.0
A07p25360 Brassica napus HOM05D007747 ORTHO05D009997 3.9e-37 157.5 74 98.6
BraA07t30181Z Brassica rapa HOM05D007747 ORTHO05D009997 3.9e-37 157.5 74 98.6
C06p27230 Brassica napus HOM05D007747 ORTHO05D009997 2.2e-32 141.7 65 100.0
Sp5g02207 Schrenkiella parvula HOM05D007747 ORTHO05D009997 2.6e-25 118.2 74 74.3
BcaB02g08951 Brassica carinata HOM05D007747 ORTHO05D009997 1.9e-23 112.1 74 74.3
BolC4t22310H Brassica oleracea HOM05D007747 ORTHO05D009997 4.6e-22 107.5 74 71.6
Thhalv10029330m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 6.0e-22 107.1 74 67.6
A05p05960 Brassica napus HOM05D007747 ORTHO05D009997 6.6e-21 103.6 74 70.3
BraA05t19559Z Brassica rapa HOM05D007747 ORTHO05D009997 6.6e-21 103.6 74 70.3
A09p53230 Brassica napus HOM05D007747 ORTHO05D009997 1.6e-19 99.0 72 62.5
BcaC07g40620 Brassica carinata HOM05D007747 ORTHO05D009997 5.3e-18 94.0 72 59.7
C08p36030 Brassica napus HOM05D007747 ORTHO05D009997 6.9e-18 93.6 72 59.7
Thhalv10003401m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 2.6e-17 91.7 71 56.3
BcaC02g12161 Brassica carinata HOM05D007747 ORTHO05D009997 9.9e-17 89.7 60 68.3
BraA07t30680Z Brassica rapa HOM05D007747 ORTHO05D009997 3.8e-16 87.8 80 56.2
AL5G43420 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 1.4e-15 85.9 76 57.9
AT3G61175 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 4.2e-15 84.3 78 55.1
AT3G61177 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 4.2e-15 84.3 76 55.3
BolC6t37892H Brassica oleracea HOM05D007747 ORTHO05D009997 4.2e-15 84.3 74 60.8
BraA07t30180Z Brassica rapa HOM05D007747 ORTHO05D009997 4.2e-15 84.3 74 62.2
A07p30430 Brassica napus HOM05D007747 ORTHO05D009997 5.4e-15 84.0 80 53.8
C06p27260 Brassica napus HOM05D007747 ORTHO05D009997 7.1e-15 83.6 74 59.5
BolC6t37896H Brassica oleracea HOM05D007747 ORTHO05D009997 7.1e-15 83.6 74 59.5
Carub.0002s0802 Capsella rubella HOM05D007747 ORTHO05D009997 7.1e-15 83.6 76 56.6
A07p25370 Brassica napus HOM05D007747 ORTHO05D009997 1.6e-14 82.4 74 58.1
A07p25380 Brassica napus HOM05D007747 ORTHO05D009997 1.6e-14 82.4 74 58.1
BraA07t30182Z Brassica rapa HOM05D007747 ORTHO05D009997 1.6e-14 82.4 74 58.1
A04p01260 Brassica napus HOM05D007747 ORTHO05D028248 4.6e-14 80.9 78 53.8
BraA04t15845Z Brassica rapa HOM05D007747 ORTHO05D028248 4.6e-14 80.9 78 53.8
C04p06880 Brassica napus HOM05D007747 ORTHO05D009997 7.9e-14 80.1 54 66.7
AL2G27660 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 1.0e-13 79.7 72 52.8
C06p27210 Brassica napus HOM05D007747 ORTHO05D009997 1.0e-13 79.7 74 58.1
C06p27220 Brassica napus HOM05D007747 ORTHO05D009997 1.0e-13 79.7 74 58.1
C06p27240 Brassica napus HOM05D007747 ORTHO05D009997 1.0e-13 79.7 74 58.1
BolC4t24705H Brassica oleracea HOM05D007747 ORTHO05D009997 1.3e-13 79.3 71 46.5
C04p31610 Brassica napus HOM05D007747 ORTHO05D028248 1.8e-13 79.0 78 52.6
BolC4t24708H Brassica oleracea HOM05D007747 ORTHO05D028248 1.8e-13 79.0 78 52.6
A04p01250 Brassica napus HOM05D007747 ORTHO05D009997 3.0e-13 78.2 71 46.5
BraA04t15844Z Brassica rapa HOM05D007747 ORTHO05D009997 3.0e-13 78.2 71 46.5
C06p27250 Brassica napus HOM05D007747 ORTHO05D009997 5.1e-13 77.4 74 56.8
Thhalv10006351m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 1.9e-12 75.5 74 48.6
Carub.0230s0002 Capsella rubella HOM05D007747 ORTHO05D009997 2.1e-11 72.0 76 47.4
Carub.0002s1314 Capsella rubella HOM05D007747 ORTHO05D009997 3.7e-11 71.2 78 48.7
AL5G21440 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 8.1e-11 70.1 79 46.8
AT3G20997 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 8.1e-11 70.1 75 49.3
BolC8t51184H Brassica oleracea HOM05D007747 ORTHO05D009997 1.1e-10 69.7 51 52.9
Carub.0001s1284 Capsella rubella HOM05D007747 ORTHO05D009997 1.1e-10 69.7 78 52.6
AL807U10010 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 1.4e-10 69.3 75 49.3
AT3G20993 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 1.8e-10 68.9 76 48.7
BraA07t30179Z Brassica rapa HOM05D007747 ORTHO05D009997 1.8e-10 68.9 57 61.4
BcaB03g15568 Brassica carinata HOM05D007747 ORTHO05D009997 2.4e-10 68.6 74 44.6
CARHR121310 Cardamine hirsuta HOM05D007747 ORTHO05D009997 3.1e-10 68.2 77 49.4
BcaC08g45800 Brassica carinata HOM05D007747 ORTHO05D009997 4.0e-10 67.8 74 43.2
CARHR096880 Cardamine hirsuta HOM05D007747 ORTHO05D009997 4.0e-10 67.8 76 44.7
AL5G21430 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 5.3e-10 67.4 73 49.3
CARHR101820 Cardamine hirsuta HOM05D007747 ORTHO05D009997 5.3e-10 67.4 76 44.7
AT3G43505 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 6.9e-10 67.0 79 44.3
BcaB06g28203 Brassica carinata HOM05D007747 ORTHO05D024130 9.0e-10 66.6 76 46.1
C06p27180 Brassica napus HOM05D007747 ORTHO05D009997 9.0e-10 66.6 56 55.4
A07p30900 Brassica napus HOM05D007747 ORTHO05D009997 1.2e-09 66.2 74 41.9
Carub.0001s3631 Capsella rubella HOM05D007747 ORTHO05D014853 1.2e-09 66.2 76 50.0
A07p18970 Brassica napus HOM05D007747 ORTHO05D024130 1.5e-09 65.9 83 43.4
C06p35890 Brassica napus HOM05D007747 ORTHO05D009997 1.5e-09 65.9 74 41.9
BraA07t29602Z Brassica rapa HOM05D007747 ORTHO05D024130 1.5e-09 65.9 83 43.4
BraA07t30726Z Brassica rapa HOM05D007747 ORTHO05D009997 1.5e-09 65.9 74 41.9
C06p35910 Brassica napus HOM05D007747 ORTHO05D009997 2.0e-09 65.5 74 47.3
A07p30920 Brassica napus HOM05D007747 ORTHO05D009997 2.6e-09 65.1 74 47.3
Thhalv10017941m.g Eutrema salsugineum HOM05D007747 ORTHO05D014853 3.4e-09 64.7 72 43.1
BolC4t23792H Brassica oleracea HOM05D007747 ORTHO05D024130 7.6e-09 63.5 83 42.2
C04p22980 Brassica napus HOM05D007747 ORTHO05D024130 1.3e-08 62.8 83 42.2
Carub.0002s0801 Capsella rubella HOM05D007747 ORTHO05D009997 2.9e-08 61.6 48 58.3
Sp5g02203 Schrenkiella parvula HOM05D009342 ORTHO05D009997 1.1e-07 59.7 77 44.2
Carub.0005s0920 Capsella rubella HOM05D007747 ORTHO05D009997 1.4e-07 59.3 67 43.3
Carub.0001s1285 Capsella rubella HOM05D007747 ORTHO05D009997 1.9e-07 58.9 77 45.5
BcaB06g29617 Brassica carinata HOM05D016272 ORTHO05D014853 2.5e-07 58.5 78 41.0
AT3G61182 Arabidopsis thaliana HOM05D007747 ORTHO05D014853 4.2e-07 57.8 77 44.2
Carub.0005s2785 Capsella rubella HOM05D007747 ORTHO05D014853 4.2e-07 57.8 73 43.8
CARHR171480 Cardamine hirsuta HOM05D007747 ORTHO05D009997 2.1e-06 55.5 54 44.4
AL5G43440 Arabidopsis lyrata HOM05D007747 ORTHO05D014853 2.7e-06 55.1 74 45.9
A09p53240 Brassica napus HOM05D009342 ORTHO05D009997 2.7e-06 55.1 77 42.9
AT2G10535 Arabidopsis thaliana HOM05D007747 ORTHO05D023629 4.6e-06 54.3 85 38.8
C04p55820 Brassica napus HOM05D016272 ORTHO05D014853 4.6e-06 54.3 75 38.7
BcaB07g30795 Brassica carinata HOM05D009342 ORTHO05D012604 6.0e-06 53.9 78 37.2
AT1G49435 Arabidopsis thaliana HOM05D007747 ORTHO05D081092 7.9e-06 53.5 74 40.5
A04p20120 Brassica napus HOM05D016272 ORTHO05D014853 7.9e-06 53.5 75 38.7
BolC4t27109H Brassica oleracea HOM05D016272 ORTHO05D014853 7.9e-06 53.5 75 38.7


User provided reference genes

Program Settings