Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 4.5e-80 301.2 152 100.0
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 2.1e-45 186.0 120 83.3
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 8.8e-44 180.6 120 81.7
BolC2t07948H Brassica oleracea HOM05D007024 ORTHO05D008865 1.6e-40 169.9 101 90.1
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 2.1e-37 159.5 120 75.0
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 2.1e-37 159.5 120 75.0
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 6.1e-37 157.9 120 74.2
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 6.1e-37 157.9 120 74.2
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 2.3e-36 156.0 120 72.5
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 5.2e-36 154.8 121 71.1
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 3.7e-34 148.7 123 74.0
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 3.5e-32 142.1 120 67.5
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 3.8e-31 138.7 120 65.8
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 5.0e-31 138.3 120 67.5
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 1.5e-30 136.7 121 67.8
BcaC03g14404 Brassica carinata HOM05D007024 ORTHO05D008865 2.7e-29 132.5 101 76.2
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 2.0e-27 126.3 121 64.5
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 2.4e-25 119.4 121 58.7
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 2.0e-19 99.8 126 52.4
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 2.7e-16 89.4 122 48.4
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 5.0e-15 85.1 129 46.5
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 1.9e-14 83.2 126 47.6
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 2.5e-14 82.8 75 61.3
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 5.6e-14 81.6 122 45.1
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 7.3e-14 81.3 122 44.3
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 9.5e-14 80.9 127 44.9
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.2e-13 80.5 76 56.6
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 1.6e-13 80.1 122 45.1
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 2.8e-13 79.3 123 45.5
BcaB03g14405 Brassica carinata HOM05D033897 ORTHO05D032280 3.6e-13 79.0 51 78.4
C07p24150 Brassica napus HOM05D033897 ORTHO05D032280 3.6e-13 79.0 51 78.4
BolC7t42941H Brassica oleracea HOM05D033897 ORTHO05D032280 3.6e-13 79.0 51 78.4
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 4.7e-13 78.6 74 58.1
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 8.0e-13 77.8 80 51.2
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.0e-12 77.4 80 53.8
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 1.0e-12 77.4 120 38.3
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 1.4e-12 77.0 89 51.7
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 2.3e-12 76.3 133 44.4
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 4.0e-12 75.5 40 85.0
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 4.0e-12 75.5 73 58.9
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 6.8e-12 74.7 73 58.9
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 6.8e-12 74.7 122 43.4
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 8.9e-12 74.3 130 42.3
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 8.9e-12 74.3 120 37.5
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 1.2e-11 73.9 120 37.5
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.5e-11 73.6 123 39.8
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 2.0e-11 73.2 83 51.8
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 2.0e-11 73.2 123 41.5
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 2.6e-11 72.8 59 62.7
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 2.6e-11 72.8 70 55.7
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 3.4e-11 72.4 45 73.3
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 3.4e-11 72.4 83 49.4
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 3.4e-11 72.4 125 41.6
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 4.4e-11 72.0 48 72.9
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 4.4e-11 72.0 48 70.8
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 4.4e-11 72.0 59 61.0
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 4.4e-11 72.0 61 60.7
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 5.7e-11 71.6 107 44.9
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 5.7e-11 71.6 45 73.3
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 5.7e-11 71.6 123 43.1
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 7.5e-11 71.2 53 66.0
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 7.5e-11 71.2 48 70.8
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 7.5e-11 71.2 78 50.0
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 7.5e-11 71.2 48 68.8
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 9.8e-11 70.9 72 48.6
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 9.8e-11 70.9 70 57.1
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 9.8e-11 70.9 59 62.7
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 1.3e-10 70.5 35 88.6
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 1.7e-10 70.1 48 68.8
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 2.2e-10 69.7 72 54.2
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 2.2e-10 69.7 56 64.3
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 2.9e-10 69.3 40 75.0
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 3.7e-10 68.9 129 41.9
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 3.7e-10 68.9 128 38.3
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 4.9e-10 68.6 67 53.7
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 4.9e-10 68.6 127 37.8
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 6.4e-10 68.2 40 77.5
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 6.4e-10 68.2 67 55.2
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 6.4e-10 68.2 40 75.0
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 1.1e-09 67.4 39 71.8
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 1.4e-09 67.0 71 52.1
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 1.8e-09 66.6 85 45.9
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 2.4e-09 66.2 40 75.0
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 3.2e-09 65.9 40 75.0
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 3.2e-09 65.9 73 53.4
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 4.1e-09 65.5 47 68.1
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 7.0e-09 64.7 48 68.8
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 1.2e-08 63.9 40 67.5
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 1.2e-08 63.9 45 68.9
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 1.2e-08 63.9 34 82.4
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 1.2e-08 63.9 37 75.7
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.6e-08 63.5 40 67.5
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.0e-08 63.2 36 75.0
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 1.0e-07 60.8 41 63.4
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 2.3e-07 59.7 38 65.8
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 5.0e-07 58.5 41 61.0
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 5.0e-07 58.5 38 68.4
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 5.0e-07 58.5 38 68.4
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 2.5e-06 56.2 32 71.9
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 9.5e-06 54.3 35 62.9


User provided reference genes

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