Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 6.6e-159 563.9 273 100.0
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 3.3e-150 535.0 271 94.8
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 9.0e-140 500.4 256 95.3
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 1.2e-139 500.0 256 96.1
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 2.5e-137 492.3 256 94.5
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 2.5e-137 492.3 256 94.1
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 4.0e-132 474.9 256 90.2
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 2.3e-127 459.1 253 88.5
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 8.7e-127 457.2 256 85.9
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 1.5e-126 456.4 256 85.2
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 1.5e-123 446.4 257 84.8
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 2.1e-120 436.0 257 82.1
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 1.7e-114 416.4 256 78.5
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 3.6e-112 408.7 253 76.7
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 2.0e-102 376.3 266 67.3
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 5.9e-99 364.8 256 68.0
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 2.2e-98 362.8 269 65.1
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 5.0e-98 361.7 256 68.8
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 2.5e-97 359.4 256 67.6
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 7.2e-97 357.8 256 66.8
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 1.0e-95 354.0 256 66.4
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 2.3e-95 352.8 246 66.3
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 6.7e-95 351.3 231 69.3
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 6.7e-95 351.3 231 69.3
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 1.5e-94 350.1 231 69.3
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 1.5e-94 350.1 231 70.6
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 2.6e-94 349.4 256 65.2
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.3e-94 349.0 229 69.4
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 1.7e-93 346.7 251 65.7
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 2.8e-93 345.9 256 64.8
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 8.3e-93 344.4 256 63.7
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 1.1e-92 344.0 249 65.5
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 2.4e-92 342.8 256 63.3
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 3.1e-92 342.4 247 66.0
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 4.1e-92 342.0 253 63.6
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 2.7e-91 339.3 240 64.6
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 3.5e-91 339.0 244 65.2
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 3.5e-91 339.0 243 62.6
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 3.5e-91 339.0 243 62.6
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 1.0e-90 337.4 247 66.0
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 2.9e-90 335.9 250 65.2
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 2.9e-90 335.9 253 62.5
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 3.8e-90 335.5 245 65.7
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 5.0e-90 335.1 217 71.0
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 1.5e-89 333.6 233 67.0
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 1.9e-89 333.2 225 67.6
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 3.2e-89 332.4 225 67.6
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 4.2e-89 332.0 257 61.1
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 4.2e-89 332.0 252 63.9
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 9.4e-89 330.9 235 67.2
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.6e-88 330.1 249 62.2
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 2.7e-88 329.3 253 60.9
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 3.6e-88 328.9 233 66.1
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 4.7e-88 328.6 274 59.1
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 8.0e-88 327.8 243 63.4
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 6.8e-87 324.7 239 64.4
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 8.8e-87 324.3 250 64.4
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 1.2e-86 323.9 248 62.1
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 1.5e-86 323.6 236 64.4
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 2.0e-86 323.2 233 67.8
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 4.4e-86 322.0 289 55.7
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 4.4e-86 322.0 239 63.2
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 9.8e-86 320.9 239 62.8
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 1.7e-85 320.1 233 63.5
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 1.7e-85 320.1 239 62.8
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 2.2e-85 319.7 225 65.8
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 2.8e-85 319.3 256 58.6
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.7e-85 318.9 252 59.5
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 1.4e-84 317.0 236 62.7
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 1.8e-84 316.6 246 63.4
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 2.4e-84 316.2 243 62.1
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 9.1e-84 314.3 241 61.4
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 9.1e-84 314.3 291 55.7
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 7.7e-83 311.2 231 61.5
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.7e-82 310.1 241 60.6
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 2.9e-82 309.3 268 57.8
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 1.5e-81 307.0 236 59.7
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 3.3e-81 305.8 251 57.8
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 3.0e-79 299.3 271 55.4
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 1.5e-78 297.0 235 58.3
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 9.2e-76 287.7 222 58.6
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 5.6e-73 278.5 191 66.0
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 5.6e-73 278.5 291 50.9
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 7.3e-73 278.1 227 56.4
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 2.1e-72 276.6 192 65.1
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 9.2e-68 261.2 183 64.5
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 7.3e-65 251.5 185 66.5
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 8.9e-63 244.6 163 71.2
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 9.8e-62 241.1 198 58.1
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 1.7e-61 240.4 206 53.9
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 2.1e-59 233.4 170 64.1
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 5.6e-57 225.3 158 65.8
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 2.8e-56 223.0 136 70.6
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 3.6e-56 222.6 204 48.5
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 2.6e-54 216.5 211 46.4
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 1.6e-48 197.2 160 55.0
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 3.1e-47 193.0 170 52.9
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 6.8e-47 191.8 164 57.9
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 6.8e-47 191.8 133 68.4
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 6.8e-47 191.8 133 68.4
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.3e-45 187.6 129 61.2
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 2.4e-44 183.3 138 63.0
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 1.1e-31 141.4 103 62.1
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 1.1e-28 131.3 204 35.3
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 2.7e-27 126.7 95 64.2
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 1.8e-26 124.0 256 37.9
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 4.8e-24 115.9 154 42.9
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 3.8e-21 106.3 127 47.2
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 5.7e-17 92.4 59 74.6
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 9.6e-17 91.7 53 81.1
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.1e-15 86.7 44 84.1
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.1e-15 86.7 44 84.1
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 4.1e-15 86.3 73 61.6
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 3.2e-12 76.6 38 89.5
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 7.1e-12 75.5 59 57.6
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 7.9e-11 72.0 146 28.1
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 1.9e-09 67.4 94 41.5
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 7.4e-09 65.5 41 73.2
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 1.6e-08 64.3 78 44.9
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.8e-07 60.8 75 45.3
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 2.4e-07 60.5 38 68.4
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 2.4e-07 60.5 38 68.4
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 4.1e-07 59.7 74 44.6
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 3.4e-06 56.6 45 60.0


User provided reference genes

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