Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 3.6e-156 555.1 316 100.0
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 4.7e-148 528.1 305 99.3
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.0e-142 510.4 305 97.4
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.1e-141 506.9 319 91.8
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 5.7e-138 494.6 319 90.0
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 8.3e-137 490.7 319 90.0
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 9.1e-136 487.3 318 87.4
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 9.1e-136 487.3 316 90.5
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.6e-135 486.5 319 88.4
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.6e-135 486.5 319 88.4
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 3.2e-133 478.8 306 92.5
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 2.7e-132 475.7 319 87.8
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 8.8e-131 470.7 313 86.9
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-130 470.3 320 88.1
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 5.7e-130 468.0 303 87.8
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 7.5e-130 467.6 312 89.4
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 9.8e-130 467.2 319 85.6
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 9.1e-128 460.7 319 86.2
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 5.9e-119 431.4 319 79.6
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.3e-113 413.7 305 79.3
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 2.2e-113 412.9 301 76.7
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 4.1e-112 408.7 310 69.0
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.2e-111 407.1 303 70.3
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 2.7e-111 406.0 297 78.5
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.6e-111 405.2 303 70.0
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.3e-110 403.7 303 69.6
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 3.9e-110 402.1 303 69.6
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 6.6e-110 401.4 298 73.5
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 6.6e-110 401.4 303 69.6
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 6.6e-110 401.4 303 69.6
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 6.6e-110 401.4 300 75.0
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.9e-109 399.8 307 72.6
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.9e-109 399.8 303 70.3
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 4.3e-109 398.7 300 69.3
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 3.6e-108 395.6 317 72.2
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 4.0e-107 392.1 311 66.6
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 4.0e-107 392.1 301 67.8
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 4.0e-107 392.1 307 74.3
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 8.9e-107 391.0 296 68.2
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 8.9e-107 391.0 298 68.5
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.5e-106 390.2 312 70.5
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 2.0e-106 389.8 311 65.9
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 4.4e-106 388.7 300 67.7
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 4.4e-106 388.7 312 66.0
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 7.5e-106 387.9 301 73.8
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.3e-105 387.1 301 67.4
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.3e-105 387.1 309 66.3
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.2e-105 386.3 295 68.8
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.2e-105 386.3 315 72.1
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 2.2e-105 386.3 311 65.6
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 2.9e-105 386.0 303 66.3
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 3.7e-105 385.6 303 73.3
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 6.4e-105 384.8 303 66.7
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 8.3e-105 384.4 296 68.2
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 8.3e-105 384.4 298 68.5
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 8.3e-105 384.4 292 76.7
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.1e-104 384.0 317 63.4
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.4e-104 383.6 301 68.1
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 1.4e-104 383.6 312 73.1
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.9e-104 383.3 304 73.0
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.9e-104 383.3 301 68.1
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 2.4e-104 382.9 294 68.4
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.4e-104 382.9 315 65.7
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 3.2e-104 382.5 294 73.1
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 4.1e-104 382.1 309 73.1
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 4.1e-104 382.1 291 76.6
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.4e-104 381.7 298 67.4
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 9.2e-104 380.9 301 67.8
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.6e-103 380.2 295 67.5
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.6e-103 380.2 300 68.3
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.6e-103 380.2 301 72.1
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.6e-103 380.2 317 63.1
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.6e-103 380.2 299 67.9
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 2.1e-103 379.8 294 67.0
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 2.1e-103 379.8 299 67.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 2.1e-103 379.8 309 66.3
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 6.0e-103 378.3 294 67.0
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 6.0e-103 378.3 303 67.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 7.8e-103 377.9 294 71.8
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.8e-103 377.9 322 70.8
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.0e-102 377.5 319 71.5
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.3e-102 377.1 303 67.7
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.7e-102 376.7 297 69.0
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.7e-102 376.7 306 72.9
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 2.3e-102 376.3 296 73.0
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 3.0e-102 375.9 303 66.0
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 8.6e-102 374.4 311 65.3
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 1.1e-101 374.0 294 76.2
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 7.3e-101 371.3 291 68.4
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.6e-100 370.2 314 66.9
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.6e-100 370.2 300 66.7
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.6e-100 370.2 300 75.0
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 2.8e-100 369.4 301 70.8
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.6e-100 369.0 301 71.8
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 3.6e-100 369.0 306 66.3
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 6.2e-100 368.2 311 64.6
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 8.1e-100 367.9 294 70.1
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 2.3e-99 366.3 300 66.0
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.0e-98 363.2 300 69.7
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.6e-98 362.8 314 61.5
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 6.4e-97 358.2 314 66.2
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 2.4e-96 356.3 299 67.2
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 3.2e-96 355.9 314 66.6
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 4.1e-96 355.5 313 64.2
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 5.4e-96 355.1 314 65.3
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 4.6e-95 352.1 294 63.3
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 6.0e-95 351.7 303 63.4
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 5.1e-94 348.6 294 64.3
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 5.1e-94 348.6 295 70.2
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.4e-91 340.5 307 60.6
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.5e-90 337.0 315 59.7
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.7e-89 333.6 293 62.1
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 2.1e-84 316.6 298 60.1
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.1e-80 304.3 211 86.7
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 7.1e-80 301.6 242 64.5
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 2.5e-77 293.1 215 69.8
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 7.3e-77 291.6 298 55.4
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.4e-75 287.3 240 62.9
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 9.9e-74 281.2 306 54.9
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.7e-73 280.4 296 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.0e-66 256.9 299 59.5
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.4e-66 256.1 299 58.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 3.9e-62 242.7 292 55.5
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 9.6e-61 238.0 214 62.1
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 4.8e-60 235.7 238 62.2
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 1.3e-57 227.6 293 55.3
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 3.8e-57 226.1 285 52.3
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.6e-47 193.0 257 47.5
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 4.6e-47 192.6 316 43.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.1e-43 179.5 198 53.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 8.5e-41 171.8 299 44.5
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.1e-40 171.4 290 37.2
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 4.7e-39 166.0 320 37.2
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.8e-35 154.1 173 56.6
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.8e-35 154.1 173 56.6
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.8e-35 154.1 173 56.6
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 5.0e-33 146.0 130 60.0
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.9e-32 144.1 126 57.9
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 6.1e-31 139.0 130 60.0
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 8.0e-31 138.7 82 82.9
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 4.8e-28 129.4 180 40.6
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 4.8e-28 129.4 98 67.3
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 4.2e-24 116.3 77 80.5
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 4.2e-24 116.3 127 50.4
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.6e-23 113.2 66 84.8
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 3.0e-22 110.2 224 34.4
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 5.2e-22 109.4 164 41.5
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 4.8e-20 102.8 67 76.1
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.4e-19 101.3 171 42.7
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 2.5e-16 90.5 69 66.7
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 9.4e-16 88.6 91 54.9
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 8.0e-15 85.5 71 59.2
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-13 81.6 71 56.3
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.1e-11 75.1 78 46.2
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 3.8e-09 66.6 97 40.2
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 1.6e-07 61.2 40 70.0
AT3G43260 Arabidopsis thaliana HOM05D046300 ORTHO05D038666 4.7e-07 59.7 60 46.7
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.0e-06 56.6 95 36.8


User provided reference genes

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