Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 6.6e-146 520.8 279 100.0
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-72 276.6 267 62.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 3.7e-72 275.8 267 62.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 8.2e-72 274.6 267 61.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-71 273.9 267 61.8
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.8e-71 273.5 267 62.2
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 6.9e-71 271.6 267 61.4
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 4.5e-70 268.9 267 60.7
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 1.7e-69 266.9 267 60.3
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.9e-68 263.5 267 59.6
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.5e-68 263.1 267 58.4
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 9.4e-68 261.2 267 58.8
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.2e-67 260.8 267 58.4
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.6e-67 260.4 267 58.8
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-66 257.7 266 60.5
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 2.3e-66 256.5 267 57.7
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-66 256.5 267 57.3
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-66 256.5 267 57.7
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 2.3e-66 256.5 267 57.7
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 2.6e-65 253.1 282 57.4
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-64 250.4 281 56.9
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 3.7e-64 249.2 266 57.9
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-63 246.5 306 55.9
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-62 243.8 293 55.3
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 2.6e-62 243.0 293 54.9
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 3.8e-61 239.2 293 53.6
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 3.2e-60 236.1 306 52.0
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 9.4e-60 234.6 293 52.6
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.2e-59 234.2 309 51.1
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.0e-57 226.9 267 51.7
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 4.4e-57 225.7 266 51.9
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 8.2e-56 221.5 266 51.1
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 3.1e-55 219.5 214 62.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 4.1e-55 219.2 267 50.2
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 7.0e-55 218.4 267 50.2
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 7.0e-55 218.4 267 49.1
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 9.1e-55 218.0 267 50.2
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.2e-54 217.6 267 49.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.0e-54 216.9 267 50.2
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 2.7e-54 216.5 267 49.1
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 2.7e-54 216.5 267 50.2
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 3.5e-54 216.1 267 49.8
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 3.5e-54 216.1 267 49.1
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.0e-53 214.5 267 49.8
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.0e-53 214.5 267 49.4
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.3e-53 214.2 267 48.3
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.3e-53 214.2 266 48.9
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.7e-53 213.8 267 48.3
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.7e-53 213.8 267 48.3
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.9e-53 213.0 266 48.9
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 3.8e-53 212.6 267 48.7
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 3.8e-53 212.6 268 49.6
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 6.5e-53 211.8 267 48.7
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 6.5e-53 211.8 267 47.6
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 6.5e-53 211.8 267 48.7
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.1e-52 211.1 267 48.3
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.5e-52 210.7 267 48.7
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.9e-52 210.3 267 48.7
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.9e-52 210.3 267 49.1
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 3.2e-52 209.5 267 47.6
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 4.2e-52 209.1 267 48.7
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.2e-52 209.1 269 48.7
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 4.2e-52 209.1 267 47.6
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 4.2e-52 209.1 269 49.4
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 5.5e-52 208.8 267 48.3
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 5.5e-52 208.8 269 48.7
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.2e-52 208.4 269 48.7
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.2e-52 208.4 269 48.7
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 9.4e-52 208.0 267 47.2
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 9.4e-52 208.0 267 48.7
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.2e-51 207.6 268 49.6
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.2e-51 207.6 267 48.7
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.2e-51 207.6 267 47.9
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.2e-51 207.6 267 47.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 2.1e-51 206.8 267 48.7
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 2.1e-51 206.8 267 48.3
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.1e-51 206.8 267 47.2
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 2.7e-51 206.5 269 48.7
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 2.7e-51 206.5 267 47.9
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 2.7e-51 206.5 267 49.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 3.6e-51 206.1 267 47.6
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 6.1e-51 205.3 269 49.8
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 8.0e-51 204.9 267 47.2
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 8.0e-51 204.9 267 46.8
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.4e-50 204.1 270 50.4
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-50 204.1 279 50.2
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.4e-50 204.1 267 47.2
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.8e-50 203.8 280 48.2
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.8e-50 203.8 267 47.2
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.8e-50 203.8 267 47.2
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.3e-50 203.4 297 45.8
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 3.0e-50 203.0 267 47.9
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 3.0e-50 203.0 269 48.7
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 3.0e-50 203.0 267 47.9
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 5.2e-50 202.2 267 48.3
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.5e-49 200.7 267 47.9
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 1.5e-49 200.7 267 46.8
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 1.5e-49 200.7 267 46.8
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.0e-49 200.3 269 49.1
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.6e-49 199.9 269 46.1
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 3.4e-49 199.5 269 46.8
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 3.4e-49 199.5 271 46.1
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 3.4e-49 199.5 267 47.9
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 3.4e-49 199.5 267 47.9
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 5.7e-49 198.7 267 47.2
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 5.7e-49 198.7 269 46.5
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 7.5e-49 198.4 304 44.1
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 3.7e-48 196.1 267 45.3
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.2e-46 191.0 269 45.4
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 3.5e-46 189.5 261 48.3
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 4.5e-46 189.1 284 45.4
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 7.7e-46 188.3 268 45.5
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.0e-45 188.0 285 44.9
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.3e-45 186.8 268 45.9
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.5e-44 183.3 267 43.4
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 3.2e-44 183.0 266 44.4
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 7.2e-44 181.8 269 46.8
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 7.2e-44 181.8 267 44.6
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 9.5e-44 181.4 266 44.7
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.2e-43 181.0 268 45.1
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 6.1e-43 178.7 266 44.0
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.1e-43 178.7 266 43.6
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 6.8e-42 175.3 311 40.2
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 2.6e-41 173.3 267 41.6
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 3.4e-41 172.9 268 42.5
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.4e-41 172.9 361 37.7
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.9e-40 169.1 173 56.6
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.9e-40 169.1 173 56.6
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.4e-39 167.5 215 47.9
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 9.2e-39 164.9 163 62.6
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 2.0e-38 163.7 179 54.7
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.3e-37 161.0 267 40.8
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.7e-37 160.6 267 40.4
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.1e-36 157.9 269 37.2
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 3.3e-36 156.4 267 40.8
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 4.3e-36 156.0 267 40.1
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 6.1e-35 152.1 273 38.8
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 3.0e-34 149.8 270 37.0
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.6e-33 146.7 267 37.1
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 5.7e-33 145.6 267 37.1
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 9.8e-33 144.8 234 40.2
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 1.9e-28 130.6 152 52.6
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 4.3e-28 129.4 272 34.2
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 9.5e-28 128.3 268 34.3
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 2.1e-27 127.1 273 38.1
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 6.4e-24 115.5 268 34.3
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.9e-21 106.3 148 46.6
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.9e-20 104.0 150 42.7
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.6e-19 100.9 161 41.6
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.1e-19 98.6 132 48.5
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.8e-18 97.4 81 64.2
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.3e-18 97.1 174 41.4
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 2.3e-18 97.1 148 43.9
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 5.2e-18 95.9 55 89.1
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.4e-17 92.8 269 34.6
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 1.3e-16 91.3 174 40.2
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.2e-16 90.5 79 63.3
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 4.1e-15 86.3 165 38.2
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 9.5e-12 75.1 141 39.0
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-10 71.6 56 67.9
BcaC08g43899 Brassica carinata HOM05D013925 ORTHO05D017512 5.2e-10 69.3 34 94.1
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 2.6e-09 67.0 48 68.8
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 7.6e-09 65.5 138 34.1
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 3.8e-08 63.2 102 39.2
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-07 60.8 72 55.6
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-07 60.5 72 54.2
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.4e-07 60.5 72 54.2
BolC7t40599H Brassica oleracea HOM05D013925 ORTHO05D017512 5.4e-07 59.3 63 50.8
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 5.4e-07 59.3 72 54.2
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.4e-07 59.3 65 52.3
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 7.1e-07 58.9 90 40.0
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-06 57.8 72 52.8
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.6e-06 57.8 110 35.5
BolC7t40598H Brassica oleracea HOM05D013925 ORTHO05D017512 2.1e-06 57.4 63 49.2
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.7e-06 57.0 72 52.8


User provided reference genes

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