Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 0.0e+00 1357.8 779 100.0
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 0.0e+00 1337.8 779 98.7
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 0.0e+00 1335.9 779 98.6
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 0.0e+00 1268.4 785 94.1
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 0.0e+00 1158.3 784 86.5
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.1e-311 1073.2 817 81.0
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 3.8e-300 1034.6 813 73.9
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.3e-281 972.2 793 71.0
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 7.2e-259 897.5 816 65.2
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.0e-257 893.6 819 66.2
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 7.2e-251 870.9 817 64.7
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 5.2e-249 864.8 800 62.6
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 6.1e-234 814.7 661 76.9
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.3e-183 647.5 812 52.5
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 5.5e-158 562.4 732 53.4
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.7e-154 550.8 769 49.7
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.6e-133 479.9 673 45.2
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.0e-119 435.3 815 39.8
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 3.2e-113 413.7 806 41.6
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 5.4e-113 412.9 780 41.2
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 5.4e-113 412.9 794 40.7
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 7.0e-113 412.5 794 40.7
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.6e-109 401.4 702 39.9
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 8.9e-108 395.6 701 40.9
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.5e-107 394.8 777 40.0
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 4.9e-106 389.8 691 40.7
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 3.2e-105 387.1 224 100.0
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 4.6e-104 383.3 692 42.1
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.8e-101 374.0 796 38.1
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 2.8e-101 374.0 692 39.6
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 4.7e-101 373.2 801 37.7
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 8.1e-101 372.5 616 42.4
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 6.8e-100 369.4 760 40.0
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.6e-99 367.5 709 39.6
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.3e-98 365.2 783 38.8
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.3e-98 365.2 688 38.7
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.7e-98 364.8 733 40.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 2.2e-98 364.4 764 39.9
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.2e-98 364.4 714 39.1
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 3.8e-98 363.6 767 39.4
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.1e-97 362.1 787 38.2
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 3.2e-97 360.5 786 36.3
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 3.2e-97 360.5 786 38.2
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 4.1e-97 360.1 806 37.8
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 5.4e-97 359.8 683 39.8
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 7.1e-97 359.4 673 37.7
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.2e-96 358.6 696 42.8
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 4.6e-96 356.7 805 36.4
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 7.8e-96 355.9 781 38.2
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 2.3e-95 354.4 808 37.9
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 3.0e-95 354.0 787 37.4
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 6.6e-95 352.8 712 38.2
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 8.6e-95 352.4 812 37.1
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.1e-94 352.1 700 41.3
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.3e-94 350.5 662 36.7
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.1e-92 345.5 798 37.0
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 2.0e-91 341.3 802 36.2
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.9e-89 334.7 659 36.1
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.2e-88 332.0 669 36.5
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.6e-88 331.6 754 36.7
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.6e-88 331.6 670 37.2
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.6e-88 331.6 718 36.6
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 5.1e-87 326.6 780 37.9
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 6.6e-87 326.2 709 36.5
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.9e-86 324.7 778 35.7
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.5e-86 324.3 678 35.5
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 2.5e-86 324.3 736 39.9
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.1e-85 321.2 694 37.8
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.8e-85 320.9 740 39.3
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.8e-84 318.2 682 37.4
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 6.9e-84 316.2 790 37.5
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 9.0e-84 315.8 727 38.9
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.5e-83 315.1 735 37.4
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 7.6e-83 312.8 682 35.9
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 1.7e-82 311.6 701 36.9
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 3.2e-81 307.4 680 35.0
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 7.1e-81 306.2 747 38.2
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 9.3e-81 305.8 664 36.1
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.2e-80 305.4 860 33.4
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 3.5e-80 303.9 685 34.9
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.1e-78 298.9 690 34.8
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.1e-76 292.4 681 33.5
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 6.9e-76 289.7 794 32.1
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 9.0e-76 289.3 769 33.9
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.2e-75 288.9 676 34.0
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 3.4e-75 287.3 820 34.9
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.5e-75 287.0 683 35.7
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.3e-74 285.4 674 35.9
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.7e-74 285.0 704 34.5
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 8.4e-74 282.7 857 31.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 2.4e-73 281.2 801 37.0
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.5e-73 280.0 714 31.5
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 3.3e-70 270.8 679 33.0
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 3.3e-70 270.8 880 31.0
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 7.4e-70 269.6 685 33.3
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 7.4e-70 269.6 687 32.3
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.3e-69 268.9 703 31.0
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.4e-68 264.6 732 31.3
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 5.3e-68 263.5 718 34.1
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.1e-65 255.8 798 31.1
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.9e-65 255.0 651 31.2
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.1e-64 251.5 829 33.7
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 6.0e-64 250.0 682 29.6
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 6.3e-61 240.0 810 28.9
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.4e-60 238.8 633 35.5
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.1e-60 237.7 937 27.0
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 6.1e-56 223.4 725 29.1
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.0e-55 222.6 194 54.6
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 2.3e-55 221.5 737 30.3
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.9e-54 218.4 969 30.5
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 7.4e-54 216.5 632 34.2
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.6e-53 215.3 683 29.6
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 6.3e-53 213.4 301 44.5
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 8.2e-53 213.0 632 33.4
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.5e-51 207.2 603 29.9
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.1e-46 192.6 672 28.7
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 8.2e-45 186.4 276 42.8
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.5e-43 180.6 661 25.1
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 6.1e-40 170.2 429 35.4
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.4e-38 163.3 695 25.9
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 9.1e-36 156.4 274 38.0
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 9.1e-36 156.4 133 55.6
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 7.7e-35 153.3 217 40.1
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.4e-28 132.5 164 51.2
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 3.1e-28 131.3 133 54.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.5e-27 127.9 150 42.0
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.5e-25 121.7 233 37.8
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 1.5e-22 112.5 384 32.3
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 2.6e-22 111.7 780 27.6
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 6.3e-21 107.1 144 46.5
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 5.5e-17 94.0 203 33.0
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 2.1e-16 92.0 198 35.9
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 2.8e-16 91.7 170 38.8
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.4e-15 89.4 216 30.1
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 2.6e-14 85.1 508 27.6
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 2.2e-13 82.0 194 35.1
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 3.3e-09 68.2 75 48.0
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 4.3e-09 67.8 118 36.4


User provided reference genes

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