Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 3.7e-117 424.9 213 100.0
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 2.0e-49 199.9 115 89.6
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 2.0e-49 199.9 115 89.6
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 2.0e-49 199.9 115 89.6
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-49 199.1 115 88.7
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 2.8e-48 196.1 115 90.4
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.8e-48 196.1 115 90.4
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 3.8e-45 185.7 115 80.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.6e-43 180.3 103 90.3
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.4e-42 177.2 115 80.0
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 4.0e-42 175.6 115 76.5
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 5.2e-42 175.3 115 79.1
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 2.6e-41 172.9 115 79.1
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.8e-40 169.5 115 77.4
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.7e-40 169.1 115 80.0
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.8e-40 168.7 119 74.8
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.6e-33 146.4 115 68.7
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.7e-29 133.7 119 58.8
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 2.3e-29 133.3 115 61.7
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 2.3e-29 133.3 114 61.4
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 2.9e-29 132.9 114 60.5
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 3.8e-29 132.5 114 61.4
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 5.0e-29 132.1 119 60.5
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.1e-28 131.0 115 60.9
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.1e-28 131.0 115 60.9
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 1.1e-28 131.0 115 60.9
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.5e-28 130.6 119 60.5
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.9e-28 130.2 115 59.1
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.5e-28 129.8 115 60.0
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 2.5e-28 129.8 115 60.0
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 3.3e-28 129.4 115 57.4
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 3.3e-28 129.4 115 62.6
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 5.6e-28 128.6 115 59.1
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 5.6e-28 128.6 115 59.1
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 7.3e-28 128.3 112 62.5
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 7.3e-28 128.3 146 52.7
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 9.5e-28 127.9 114 58.8
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.2e-27 127.5 114 59.6
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 1.2e-27 127.5 114 60.5
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 1.2e-27 127.5 115 57.4
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.6e-27 127.1 114 58.8
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-27 127.1 114 57.0
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-27 127.1 114 57.0
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-27 127.1 114 57.0
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.6e-27 127.1 114 60.5
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.6e-27 125.9 115 59.1
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 3.6e-27 125.9 115 59.1
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 3.6e-27 125.9 114 57.0
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.6e-27 125.9 114 57.0
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 3.6e-27 125.9 113 60.2
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.6e-27 125.9 113 58.4
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 4.7e-27 125.6 108 63.9
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 4.7e-27 125.6 128 56.2
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 6.1e-27 125.2 115 56.5
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 6.1e-27 125.2 114 58.8
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 8.0e-27 124.8 114 58.8
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.0e-27 124.8 114 57.0
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 8.0e-27 124.8 113 59.3
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 8.0e-27 124.8 114 57.0
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.0e-26 124.4 114 58.8
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 1.0e-26 124.4 112 59.8
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 1.4e-26 124.0 114 57.0
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.4e-26 124.0 115 58.3
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.3e-26 123.2 114 57.0
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 3.0e-26 122.9 115 57.4
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 6.8e-26 121.7 115 56.5
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 6.8e-26 121.7 115 56.5
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.2e-25 120.9 115 54.8
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.5e-25 120.6 115 57.4
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 2.0e-25 120.2 117 54.7
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 2.0e-25 120.2 115 55.7
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 2.0e-25 120.2 115 52.2
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-25 119.8 114 55.3
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 3.4e-25 119.4 114 55.3
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 3.4e-25 119.4 115 52.2
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 4.4e-25 119.0 114 53.5
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 5.7e-25 118.6 107 56.1
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 5.7e-25 118.6 114 57.0
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 5.7e-25 118.6 115 53.0
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 9.8e-25 117.9 115 56.5
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-24 117.5 114 54.4
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.3e-24 117.5 114 54.4
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.3e-24 117.5 114 54.4
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-24 117.1 114 53.5
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.7e-24 117.1 115 55.7
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 2.2e-24 116.7 115 53.9
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.2e-24 116.7 117 53.8
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 2.2e-24 116.7 116 53.4
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.2e-24 116.7 115 52.2
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 2.9e-24 116.3 114 51.8
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 2.9e-24 116.3 115 50.4
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 2.9e-24 116.3 115 56.5
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 6.4e-24 115.2 118 52.5
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 6.4e-24 115.2 114 51.8
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 8.3e-24 114.8 114 54.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.8e-23 113.6 114 53.5
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.8e-23 113.6 115 54.8
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 4.1e-23 112.5 115 53.0
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 7.0e-23 111.7 106 55.7
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 7.0e-23 111.7 106 55.7
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 7.0e-23 111.7 106 55.7
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.2e-22 110.9 138 49.3
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 2.0e-22 110.2 114 52.6
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 7.8e-22 108.2 115 53.9
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 3.0e-21 106.3 115 53.0
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 3.0e-21 106.3 110 55.5
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 3.0e-21 106.3 115 47.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 5.0e-21 105.5 130 48.5
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.5e-20 104.0 115 53.9
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 3.3e-20 102.8 93 58.1
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 5.6e-20 102.1 91 59.3
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 7.3e-20 101.7 119 58.0
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.6e-19 100.5 115 47.0
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.6e-19 100.5 115 48.7
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.8e-19 99.8 109 53.2
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-17 94.4 98 51.0
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 6.4e-16 88.6 103 44.7
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 6.0e-14 82.0 48 85.4
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 6.0e-14 82.0 48 85.4
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.8e-14 81.6 136 37.5
BcaC07g40045 Brassica carinata HOM05D001925 ORTHO05D005701 5.0e-13 79.0 58 74.1
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.1e-12 77.8 90 46.7
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.3e-12 76.3 114 39.5
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.8e-11 73.2 122 38.5
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 3.6e-11 72.8 56 73.2
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.3e-10 70.1 130 36.9
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 4.0e-10 69.3 114 36.8
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 6.8e-10 68.6 108 41.7
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 3.4e-09 66.2 59 57.6
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 2.2e-08 63.5 120 36.7
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 2.4e-07 60.1 117 34.2
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.2e-06 57.8 130 31.5


User provided reference genes

Program Settings