Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44795 Brassica carinata HOM05D006121 ORTHO05D027423 4.8e-138 494.6 264 100.0
BcaC06g35988 Brassica carinata HOM05D006121 ORTHO05D009559 3.8e-42 176.0 165 58.8
BolC6t37536H Brassica oleracea HOM05D000602 ORTHO05D027423 5.4e-41 172.2 93 97.8
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-39 166.4 157 65.0
C06p23660 Brassica napus HOM05D000602 ORTHO05D027423 3.9e-39 166.0 93 90.3
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 9.0e-36 154.8 135 68.1
BcaC06g36507 Brassica carinata HOM05D006121 ORTHO05D009559 2.7e-32 143.3 107 74.8
BcaC08g45230 Brassica carinata HOM05D006121 ORTHO05D002427 1.3e-31 141.0 103 71.8
BcaC04g20594 Brassica carinata HOM05D006121 ORTHO05D009559 6.2e-29 132.1 137 51.8
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 6.4e-26 122.1 134 54.5
BcaB02g11521 Brassica carinata HOM05D000602 ORTHO05D002573 2.2e-18 97.1 90 63.3
BcaC04g23080 Brassica carinata HOM05D000602 ORTHO05D002573 2.2e-18 97.1 90 63.3
A09p10410 Brassica napus HOM05D000602 ORTHO05D002573 2.2e-18 97.1 90 63.3
C09p12350 Brassica napus HOM05D000602 ORTHO05D002573 2.2e-18 97.1 90 63.3
BolC9t54128H Brassica oleracea HOM05D000602 ORTHO05D002573 2.2e-18 97.1 90 63.3
BraA09t36686Z Brassica rapa HOM05D000602 ORTHO05D002573 2.2e-18 97.1 90 63.3
Thhalv10022600m.g Eutrema salsugineum HOM05D000602 ORTHO05D002573 4.9e-18 95.9 90 62.2
Sp3g26970 Schrenkiella parvula HOM05D000602 ORTHO05D002573 4.9e-18 95.9 90 62.2
SpUn0347_0010 Schrenkiella parvula HOM05D000602 ORTHO05D002573 4.9e-18 95.9 90 62.2
BcaC05g27709 Brassica carinata HOM05D006121 ORTHO05D093169 1.1e-17 94.7 70 70.0
CARHR104820 Cardamine hirsuta HOM05D000602 ORTHO05D002573 1.9e-17 94.0 85 63.5
AL3G45400 Arabidopsis lyrata HOM05D000602 ORTHO05D002573 2.5e-17 93.6 85 63.5
Carub.0003s2804 Capsella rubella HOM05D000602 ORTHO05D002573 2.5e-17 93.6 85 63.5
BraA09t38607Z Brassica rapa HOM05D006121 ORTHO05D009559 7.1e-17 92.0 92 53.3
BcaC04g20966 Brassica carinata HOM05D006121 ORTHO05D009559 9.3e-17 91.7 101 58.4
AT2G13560 Arabidopsis thaliana HOM05D000602 ORTHO05D002573 2.1e-16 90.5 85 62.4
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 3.5e-16 89.7 110 46.4
Aa31LG8G11570 Aethionema arabicum HOM05D000602 ORTHO05D002573 7.9e-16 88.6 90 57.8
Potri.002G135300 Populus trichocarpa HOM05D000602 ORTHO05D002573 7.9e-16 88.6 90 58.9
ClCG05G002840 Citrullus lanatus HOM05D000602 ORTHO05D002573 1.3e-15 87.8 90 57.8
MELO3C006261.2 Cucumis melo HOM05D000602 ORTHO05D002573 1.3e-15 87.8 90 57.8
Eucgr.E01713 Eucalyptus grandis HOM05D000602 ORTHO05D002573 1.3e-15 87.8 85 60.0
Sed0025140 Sechium edule HOM05D000602 ORTHO05D002573 1.3e-15 87.8 90 57.8
Haze_02912 Corylus avellana HOM05D000602 ORTHO05D002573 2.3e-15 87.0 86 59.3
Sabra02G0105100 Salix brachista HOM05D000602 ORTHO05D002573 2.3e-15 87.0 88 56.8
THA.LOC104821820 Tarenaya hassleriana HOM05D000602 ORTHO05D002573 2.3e-15 87.0 90 56.7
CsaV3_3G010370 Cucumis sativus L. HOM05D000602 ORTHO05D002573 3.9e-15 86.3 90 56.7
Gohir.A05G334100 Gossypium hirsutum HOM05D000602 ORTHO05D002573 3.9e-15 86.3 90 56.7
Gohir.D04G072100 Gossypium hirsutum HOM05D000602 ORTHO05D002573 3.9e-15 86.3 90 56.7
Gorai.012G081300 Gossypium raimondii HOM05D000602 ORTHO05D002573 3.9e-15 86.3 90 56.7
TWI23G0661 Tripterygium wilfordii HOM05D000602 ORTHO05D002573 3.9e-15 86.3 90 56.7
Cfa022159 Carpinus fangiana HOM05D000602 ORTHO05D002573 5.1e-15 85.9 85 58.8
Duzib128G0914 Durio zibethinus HOM05D000602 ORTHO05D002573 5.1e-15 85.9 90 56.7
Duzib106G0361 Durio zibethinus HOM05D000602 ORTHO05D002573 6.7e-15 85.5 90 56.7
Aqoxy7G00872 Aquilegia oxysepala HOM05D000602 ORTHO05D002573 8.7e-15 85.1 90 56.7
COL.COLO4_19326 Corchorus olitorius HOM05D000602 ORTHO05D002573 8.7e-15 85.1 90 55.6
Manes.05G059200 Manihot esculenta HOM05D000602 ORTHO05D002573 1.1e-14 84.7 85 57.6
Prupe.2G114100 Prunus persica HOM05D000602 ORTHO05D002573 1.1e-14 84.7 90 54.4
CiPaw.13G020900 Carya illinoinensis HOM05D000602 ORTHO05D002573 1.5e-14 84.3 90 55.6
MD07G1087300 Malus domestica HOM05D000602 ORTHO05D002573 1.9e-14 84.0 90 53.3
Thecc.10G002100 Theobroma cacao HOM05D000602 ORTHO05D002573 1.9e-14 84.0 90 55.6
Atru.chr5.37 Acer truncatum HOM05D000602 ORTHO05D002573 2.5e-14 83.6 90 54.4
Atru.chr5.67 Acer truncatum HOM05D000602 ORTHO05D002573 2.5e-14 83.6 90 54.4
Sabra14G0031600 Salix brachista HOM05D000602 ORTHO05D002573 2.5e-14 83.6 85 58.8
Sp3g28320 Schrenkiella parvula HOM05D000305 ORTHO05D000065 2.5e-14 83.6 78 62.8
PSO675G0547 Papaver somniferum HOM05D000602 ORTHO05D002573 3.3e-14 83.2 85 56.5
PSO717G0095 Papaver somniferum HOM05D000602 ORTHO05D002573 3.3e-14 83.2 85 56.5
QL04p025913 Quercus lobata HOM05D000602 ORTHO05D002573 3.3e-14 83.2 78 61.5
Ciclev10024268m.g Citrus clementina HOM05D000602 ORTHO05D002573 4.3e-14 82.8 90 53.3
MD02G1226700 Malus domestica HOM05D000602 ORTHO05D002573 4.3e-14 82.8 90 53.3
Glyma.03G102900 Glycine max HOM05D000602 ORTHO05D002573 5.7e-14 82.4 90 54.4
Phvul.010G041000 Phaseolus vulgaris HOM05D000602 ORTHO05D002573 5.7e-14 82.4 90 54.4
EL10Ac1g00707 Beta vulgaris HOM05D000602 ORTHO05D002573 7.4e-14 82.0 90 52.2
Cc02_g25700 Coffea canephora HOM05D000602 ORTHO05D002573 9.6e-14 81.6 85 56.5
Potri.014G043700 Populus trichocarpa HOM05D000602 ORTHO05D002573 9.6e-14 81.6 90 55.6
Lalb_Chr07g0195171 Lupinus albus HOM05D000602 ORTHO05D002573 1.3e-13 81.3 78 60.3
AUR62013799 Chenopodium quinoa HOM05D000602 ORTHO05D002573 1.6e-13 80.9 85 54.1
AUR62023359 Chenopodium quinoa HOM05D000602 ORTHO05D002573 1.6e-13 80.9 85 54.1
Lj7C552G9 Lonicera japonica HOM05D000602 ORTHO05D002573 1.6e-13 80.9 90 53.3
Nn1g00627 Nelumbo nucifera HOM05D000602 ORTHO05D002573 2.1e-13 80.5 85 55.3
arahy.Tifrunner.gnm1.ann1.HLUA2X Arachis hypogaea HOM05D000602 ORTHO05D002573 2.8e-13 80.1 90 53.3
arahy.Tifrunner.gnm1.ann1.WA2SL2 Arachis hypogaea HOM05D000602 ORTHO05D002573 2.8e-13 80.1 90 53.3
MSTRG.28130 Avicennia marina HOM05D000602 ORTHO05D002573 2.8e-13 80.1 85 55.3
CANSAT80G2432 Cannabis sativa HOM05D000602 ORTHO05D002573 2.8e-13 80.1 90 53.3
CANSAT80G2849 Cannabis sativa HOM05D000602 ORTHO05D002573 2.8e-13 80.1 90 53.3
Medtr8g009500 Medicago truncatula HOM05D000602 ORTHO05D002573 2.8e-13 80.1 85 55.3
Oeu002897.2 Olea europaea HOM05D000602 ORTHO05D002573 2.8e-13 80.1 85 55.3
PGR042G2983 Punica granatum HOM05D000602 ORTHO05D002573 2.8e-13 80.1 85 55.3
Hma1.2p1_0021F.1_g014300 Hydrangea macrophylla HOM05D000602 ORTHO05D002573 3.7e-13 79.7 90 53.3
Lj3g0003921 Lotus japonicus HOM05D000602 ORTHO05D002573 3.7e-13 79.7 78 59.0
DCAR_015776 Daucus carota HOM05D000602 ORTHO05D002573 4.8e-13 79.3 90 53.3
MBI04_g03332_MAGBIO Magnolia biondii HOM05D000602 ORTHO05D002573 4.8e-13 79.3 85 55.3
MBI04_g08846_MAGBIO Magnolia biondii HOM05D000602 ORTHO05D002573 4.8e-13 79.3 85 55.3
SalBow4G2091 Salvia bowleyana HOM05D000602 ORTHO05D002573 4.8e-13 79.3 85 54.1
vmacro13534 Vaccinium macrocarpon HOM05D000602 ORTHO05D002573 4.8e-13 79.3 90 52.2
Lsat_1_v5_gn_0_4981 Lactuca sativa HOM05D000602 ORTHO05D002573 6.3e-13 79.0 90 52.2
CSS0030639 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 8.2e-13 78.6 90 53.3
FvH4_7g08630 Fragaria vesca HOM05D000602 ORTHO05D002573 8.2e-13 78.6 85 52.9
FAN01G1378 Fragaria x ananassa HOM05D000602 ORTHO05D002573 8.2e-13 78.6 85 52.9
FAN03G1294 Fragaria x ananassa HOM05D000602 ORTHO05D002573 8.2e-13 78.6 85 52.9
FAN06G2657 Fragaria x ananassa HOM05D000602 ORTHO05D002573 8.2e-13 78.6 85 52.9
FAN10G3070 Fragaria x ananassa HOM05D000602 ORTHO05D002573 8.2e-13 78.6 85 52.9
FAN10G3281 Fragaria x ananassa HOM05D000602 ORTHO05D002573 8.2e-13 78.6 85 52.9
Actinidia05792 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.1e-12 78.2 85 55.3
SGA_v2.0_scaffold95G28728 Striga asiatica HOM05D000602 ORTHO05D002573 1.1e-12 78.2 85 54.1
TAR375G0311 Trochodendron aralioides HOM05D000602 ORTHO05D002573 1.1e-12 78.2 85 54.1
GSVIVG01018377001 Vitis vinifera HOM05D000602 ORTHO05D002573 1.1e-12 78.2 85 55.3
CSS0004991 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.4e-12 77.8 85 55.3
CSS0036508 Camellia sinensis var. sinensis HOM05D000602 ORTHO05D002573 1.4e-12 77.8 85 55.3
CiPaw.14G015200 Carya illinoinensis HOM05D000602 ORTHO05D002573 2.4e-12 77.0 90 51.1
CDE11G0959 Ceratophyllum demersum HOM05D000602 ORTHO05D002573 2.4e-12 77.0 90 52.2
Dinv44014 Davidia involucrata HOM05D000602 ORTHO05D002573 2.4e-12 77.0 90 52.2
HanXRQChr01g0017481 Helianthus annuus HOM05D000602 ORTHO05D002573 2.4e-12 77.0 90 51.1
CAN.G346.12 Capsicum annuum HOM05D000602 ORTHO05D002573 4.1e-12 76.3 90 54.4
RcHm_v2.0_Chr1g0343641 Rosa chinensis HOM05D000602 ORTHO05D002573 4.1e-12 76.3 85 51.8
Solyc08g013860.3 Solanum lycopersicum HOM05D000602 ORTHO05D002573 4.1e-12 76.3 90 54.4
Sopen08g004720 Solanum pennellii HOM05D000602 ORTHO05D002573 4.1e-12 76.3 90 54.4
TPR.G17370 Trifolium pratense HOM05D000602 ORTHO05D002573 4.1e-12 76.3 90 51.1
ATR0665G658 Amborella trichopoda HOM05D000602 ORTHO05D002573 6.9e-12 75.5 90 52.2
Nn6g33673 Nelumbo nucifera HOM05D000602 ORTHO05D002573 9.0e-12 75.1 85 51.8
Nn6g33674 Nelumbo nucifera HOM05D000602 ORTHO05D002573 9.0e-12 75.1 85 51.8
Migut.N01711 Erythranthe guttata HOM05D000602 ORTHO05D002573 1.2e-11 74.7 85 52.9
Ca_23144_v3 Cicer arietinum L. HOM05D000602 ORTHO05D002573 2.6e-11 73.6 79 54.4
Ah.05g177590 Amaranthus hybridus HOM05D000602 ORTHO05D002573 3.4e-11 73.2 90 48.9
Lsat_1_v5_gn_7_11641 Lactuca sativa HOM05D000602 ORTHO05D002573 3.4e-11 73.2 79 54.4
Peaxi162Scf00075g01625 Petunia axillaris HOM05D000602 ORTHO05D002573 3.4e-11 73.2 90 51.1
unitig_8.g3324 Utricularia gibba HOM05D000602 ORTHO05D002573 3.4e-11 73.2 90 51.1
BcaC04g23066 Brassica carinata HOM05D006121 ORTHO05D009559 5.9e-11 72.4 105 45.7
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 5.9e-11 72.4 94 46.8
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 7.6e-11 72.0 68 60.3
Psat4g218960 Pisum sativum HOM05D000602 ORTHO05D002573 2.9e-10 70.1 74 56.8
Zm00001eb321980 Zea mays HOM05D000602 ORTHO05D002573 2.9e-10 70.1 85 49.4
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 6.5e-10 68.9 164 38.4
Rhsim07G0039600 Rhododendron simsii HOM05D000602 ORTHO05D002573 1.1e-09 68.2 69 58.0
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 1.9e-09 67.4 104 43.3
Os07g0496200 Oryza sativa ssp. japonica HOM05D000602 ORTHO05D002573 2.5e-09 67.0 92 44.6
HanXRQChr06g0168241 Helianthus annuus HOM05D000602 ORTHO05D002573 2.7e-08 63.5 79 50.6
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 4.6e-08 62.8 98 40.8
CANSAT25G0055 Cannabis sativa HOM05D000602 ORTHO05D002573 4.6e-08 62.8 60 60.0
HPP92_025667 Vanilla planifolia HOM05D000602 ORTHO05D002573 4.6e-08 62.8 85 48.2
Lj9A549T53 Lonicera japonica HOM05D000602 ORTHO05D002573 1.3e-07 61.2 81 48.1
SMO169G0156 Selaginella moellendorffii HOM05D000602 ORTHO05D002573 1.8e-07 60.8 97 44.3
ECA236G0545 Erigeron canadensis HOM05D000602 ORTHO05D002573 2.3e-07 60.5 79 45.6
Ah.05g177580 Amaranthus hybridus HOM05D000602 ORTHO05D002573 8.7e-07 58.5 104 41.3
Sc23g0004540 Simmondsia chinensis HOM05D000602 ORTHO05D002573 8.7e-07 58.5 52 61.5
TWI23G0920 Tripterygium wilfordii HOM05D000602 ORTHO05D014076 2.5e-06 57.0 45 66.7
Mapoly0080s0072 Marchantia polymorpha HOM05D000602 ORTHO05D002573 3.3e-06 56.6 90 42.2
SEGI_19453 Sequoiadendron giganteum HOM05D000602 ORTHO05D002573 3.3e-06 56.6 97 41.2
BcaC04g20762 Brassica carinata HOM05D006121 ORTHO05D009559 5.7e-06 55.8 110 39.1
Pp3c11_26700 Physcomitrium patens HOM05D000602 ORTHO05D002573 5.7e-06 55.8 78 42.3


User provided reference genes

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