Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44779 Brassica carinata HOM05D008872 ORTHO05D032631 1.5e-256 889.0 462 100.0
C06p23490 Brassica napus HOM05D008872 ORTHO05D032631 5.4e-230 800.8 462 92.2
BolC6t37523H Brassica oleracea HOM05D008872 ORTHO05D032631 8.3e-162 574.3 294 99.3
BolC3t19826H Brassica oleracea HOM05D008872 ORTHO05D032322 5.1e-103 379.0 443 52.1
BcaC08g45935 Brassica carinata HOM05D008872 ORTHO05D039599 7.4e-102 375.2 342 61.7
C06p37330 Brassica napus HOM05D008872 ORTHO05D039599 7.4e-102 375.2 342 61.7
C02p46890 Brassica napus HOM05D008872 ORTHO05D032322 4.8e-101 372.5 443 51.9
BcaC01g00092 Brassica carinata HOM05D008872 ORTHO05D032322 9.7e-86 321.6 384 51.8
BcaC03g16816 Brassica carinata HOM05D008872 ORTHO05D011322 2.9e-74 283.5 410 47.6
BcaC04g22210 Brassica carinata HOM05D008872 ORTHO05D011322 2.5e-65 253.8 385 46.8
C05p17110 Brassica napus HOM05D008872 ORTHO05D011322 4.2e-57 226.5 329 45.9
C07p42690 Brassica napus HOM05D008872 ORTHO05D011322 6.4e-45 186.0 443 36.1
BcaNung02292 Brassica carinata HOM05D000025 ORTHO05D000040 1.1e-44 185.3 252 48.0
BcaC02g07321 Brassica carinata HOM05D008872 ORTHO05D011322 1.7e-29 134.8 469 30.5
BolC7t44799H Brassica oleracea HOM05D008872 ORTHO05D011322 1.7e-29 134.8 138 55.8
C06p02220 Brassica napus HOM05D008872 ORTHO05D011322 2.2e-29 134.4 217 43.3
BolC3t20471H Brassica oleracea HOM05D008872 ORTHO05D011322 3.0e-26 124.0 138 53.6
C09p54500 Brassica napus HOM05D008872 ORTHO05D097415 8.1e-24 115.9 145 48.3
BcaC08g45924 Brassica carinata HOM05D021045 ORTHO05D027803 3.4e-22 110.5 186 46.2
C09p62250 Brassica napus HOM05D008872 ORTHO05D011322 1.2e-19 102.1 170 43.5
BolC2t10737H Brassica oleracea HOM05D008872 ORTHO05D105753 3.5e-19 100.5 98 57.1
C06p12820 Brassica napus HOM05D035264 ORTHO05D097178 1.6e-16 91.7 77 67.5
C09p54490 Brassica napus HOM05D008872 ORTHO05D011322 4.7e-16 90.1 133 48.9
BcaB04g20432 Brassica carinata HOM05D008872 ORTHO05D011322 9.0e-15 85.9 323 32.8
BcaC06g34166 Brassica carinata HOM05D008872 ORTHO05D039385 9.9e-14 82.4 103 50.5
BraA05t20031Z Brassica rapa HOM05D021045 ORTHO05D027803 6.0e-11 73.2 260 29.6
BraA10t42291Z Brassica rapa HOM05D000174 ORTHO05D027648 7.8e-11 72.8 78 44.9
C03p17890 Brassica napus HOM05D008872 ORTHO05D011322 1.7e-10 71.6 168 35.1
C07p31980 Brassica napus HOM05D008872 ORTHO05D039385 3.0e-10 70.9 75 56.0
A10p00120 Brassica napus HOM05D000174 ORTHO05D027648 3.9e-10 70.5 78 43.6
C08p52410 Brassica napus HOM05D008872 ORTHO05D011322 1.1e-09 68.9 125 39.2
C09p01740 Brassica napus HOM05D003240 ORTHO05D021783 1.5e-09 68.6 135 43.0
BolC3t12902H Brassica oleracea HOM05D008956 ORTHO05D013254 7.3e-09 66.2 131 40.5
C03p03630 Brassica napus HOM05D008956 ORTHO05D013254 1.3e-08 65.5 131 39.7
BcaC09g47943 Brassica carinata HOM05D003240 ORTHO05D021783 1.6e-08 65.1 135 41.5
BraA04t18895Z Brassica rapa HOM05D010893 ORTHO05D039094 2.8e-08 64.3 124 42.7
BolC7t43612H Brassica oleracea HOM05D008872 ORTHO05D011322 3.6e-08 63.9 106 39.6
BcaC01g05406 Brassica carinata HOM05D008872 ORTHO05D011322 4.8e-08 63.5 107 44.9
BcaC04g21647 Brassica carinata HOM05D034884 ORTHO05D039059 4.8e-08 63.5 129 38.0
C09p29390 Brassica napus HOM05D034884 ORTHO05D039059 6.2e-08 63.2 129 38.0
C05p01530 Brassica napus HOM05D008872 ORTHO05D011322 8.1e-08 62.8 85 47.1
BcaC06g32208 Brassica carinata HOM05D003240 ORTHO05D021783 1.4e-07 62.0 134 39.6
C09p63070 Brassica napus HOM05D003240 ORTHO05D023867 1.8e-07 61.6 131 41.2
BolC8t49585H Brassica oleracea HOM05D003240 ORTHO05D024027 1.8e-07 61.6 230 34.3
BraA08t34218Z Brassica rapa HOM05D010893 ORTHO05D016035 2.4e-07 61.2 96 45.8
C06p08310 Brassica napus HOM05D008956 ORTHO05D016720 3.1e-07 60.8 159 39.0
BcaB01g03865 Brassica carinata HOM05D003240 ORTHO05D094508 4.0e-07 60.5 136 38.2
A04p33690 Brassica napus HOM05D015039 ORTHO05D011322 5.3e-07 60.1 88 46.6
BcaC06g31611 Brassica carinata HOM05D003240 ORTHO05D091789 6.9e-07 59.7 137 38.7
BolC1t00874H Brassica oleracea HOM05D003240 ORTHO05D023867 6.9e-07 59.7 131 42.0
BolC6t36746H Brassica oleracea HOM05D012445 ORTHO05D040835 6.9e-07 59.7 115 40.9
BraA02t06360Z Brassica rapa HOM05D008956 ORTHO05D013254 6.9e-07 59.7 144 38.9
A09p39950 Brassica napus HOM05D003240 ORTHO05D021783 9.0e-07 59.3 134 40.3
BNapus_Darmor_BZH_scaffold_38p02020 Brassica napus HOM05D008872 ORTHO05D011322 9.0e-07 59.3 110 38.2
BolC2t06990H Brassica oleracea HOM05D008872 ORTHO05D011322 9.0e-07 59.3 110 38.2
BolC4t27983H Brassica oleracea HOM05D008956 ORTHO05D013254 1.2e-06 58.9 141 39.7
BcaC05g30090 Brassica carinata HOM05D015039 ORTHO05D011322 1.5e-06 58.5 88 46.6
BcaC08g43114 Brassica carinata HOM05D015039 ORTHO05D011322 1.5e-06 58.5 88 46.6
C06p03870 Brassica napus HOM05D015039 ORTHO05D000276 1.5e-06 58.5 88 46.6
BolC1t05880H Brassica oleracea HOM05D003240 ORTHO05D024027 1.5e-06 58.5 223 33.6
BolC5t28809H Brassica oleracea HOM05D015039 ORTHO05D011322 1.5e-06 58.5 88 46.6
BolC3t19888H Brassica oleracea HOM05D021045 ORTHO05D011322 2.0e-06 58.2 161 30.4
A08p21510 Brassica napus HOM05D003240 ORTHO05D016738 4.5e-06 57.0 134 40.3
BraA08t34100Z Brassica rapa HOM05D003240 ORTHO05D016738 4.5e-06 57.0 134 40.3
C06p44710 Brassica napus HOM05D003240 ORTHO05D017503 5.8e-06 56.6 126 37.3
BraA04t17515Z Brassica rapa HOM05D012445 ORTHO05D018631 5.8e-06 56.6 114 41.2
C03p09920 Brassica napus HOM05D010893 ORTHO05D016035 7.6e-06 56.2 96 43.8
C03p83110 Brassica napus HOM05D015039 ORTHO05D011322 7.6e-06 56.2 88 45.5
BolC6t39347H Brassica oleracea HOM05D012445 ORTHO05D041381 7.6e-06 56.2 100 42.0
C06p40860 Brassica napus HOM05D012445 ORTHO05D041381 9.9e-06 55.8 100 42.0


User provided reference genes

Program Settings