Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.0e-304 1049.3 550 100.0
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 8.6e-283 976.5 550 95.1
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 2.2e-270 935.3 558 90.3
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.3e-251 872.1 557 82.9
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 3.2e-205 718.8 565 72.0
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 7.2e-205 717.6 565 71.9
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 3.6e-204 715.3 564 69.9
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 2.3e-203 712.6 565 71.3
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 2.3e-203 712.6 564 70.7
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 3.8e-198 695.3 565 70.1
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.5e-197 693.3 565 69.9
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.8e-195 686.4 564 66.7
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.2e-194 683.7 559 66.2
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.6e-194 682.6 564 65.2
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 7.8e-191 671.0 537 67.8
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 5.6e-189 664.8 558 67.6
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 9.8e-186 654.1 560 63.9
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.4e-184 649.4 565 63.0
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.3e-166 590.5 551 58.4
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.6e-130 469.9 569 47.6
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.1e-128 464.5 568 48.6
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 3.7e-124 449.5 569 45.7
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.5e-122 444.1 568 45.6
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.6e-122 443.4 570 46.3
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 3.8e-121 439.5 567 44.8
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.1e-119 433.7 547 46.3
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 5.1e-118 429.1 570 44.4
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 8.8e-118 428.3 567 44.1
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.5e-117 426.8 534 46.3
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 7.4e-117 425.2 563 44.6
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 9.7e-117 424.9 583 43.9
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.3e-116 424.5 568 45.8
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.4e-115 420.2 568 44.7
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 9.1e-115 418.3 568 44.9
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 6.5e-113 412.1 534 43.6
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 6.5e-113 412.1 534 43.6
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.0e-110 404.8 568 42.4
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.4e-110 404.4 532 42.7
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 1.4e-110 404.4 568 41.7
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.1e-109 401.4 554 42.1
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 4.4e-109 399.4 586 41.1
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 4.4e-109 399.4 635 39.8
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 4.4e-109 399.4 566 40.6
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 7.4e-109 398.7 573 41.9
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 9.7e-109 398.3 561 43.3
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.3e-108 397.9 534 44.6
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.7e-108 397.5 561 43.1
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 2.8e-108 396.7 557 42.7
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 3.7e-108 396.4 568 42.3
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 3.7e-108 396.4 569 42.0
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 8.2e-108 395.2 549 42.1
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 5.3e-107 392.5 557 41.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.3e-107 392.5 561 43.5
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 9.1e-107 391.7 534 44.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.6e-106 390.2 567 42.3
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 5.9e-106 389.0 531 42.9
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 5.9e-106 389.0 534 43.4
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.2e-104 382.9 534 43.1
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 4.2e-104 382.9 534 42.9
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.2e-103 381.3 547 41.9
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.6e-103 380.9 570 41.2
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.7e-103 379.4 545 40.2
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 4.7e-103 379.4 533 40.9
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 8.0e-103 378.6 547 41.5
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.4e-102 377.9 535 40.4
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.7e-100 370.9 573 40.1
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.7e-100 370.9 572 39.9
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.2e-100 370.5 564 40.6
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.7e-100 369.8 535 40.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.8e-99 367.5 535 41.5
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.4e-99 367.1 545 41.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 3.1e-99 366.7 568 40.0
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 5.3e-99 365.9 542 39.9
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 5.3e-99 365.9 535 41.3
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.0e-99 365.5 545 41.3
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 9.1e-99 365.2 539 38.8
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.0e-97 361.7 568 38.4
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.2e-97 360.5 545 39.4
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.8e-97 359.8 573 38.2
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 3.2e-96 356.7 565 39.6
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.6e-95 354.4 574 37.5
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 2.7e-95 353.6 573 38.0
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.4e-94 351.3 511 39.5
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.3e-94 350.5 567 37.4
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.3e-94 350.5 538 40.0
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.0e-94 350.1 579 38.7
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.0e-93 347.4 567 37.9
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 7.5e-93 345.5 564 41.3
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.7e-92 343.2 537 38.4
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 8.3e-92 342.0 578 38.1
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.4e-91 340.5 557 40.0
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 3.5e-90 336.7 579 36.3
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 2.2e-89 334.0 536 40.1
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 1.6e-87 327.8 533 38.8
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.6e-87 327.8 454 43.0
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 4.0e-86 323.2 584 36.1
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.5e-85 321.2 458 41.3
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.0e-85 320.9 563 36.9
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 7.5e-85 318.9 535 36.6
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.3e-84 318.2 386 46.9
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.7e-84 317.8 568 36.1
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.1e-83 315.1 549 36.4
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.6e-82 311.2 537 35.9
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 2.7e-82 310.5 499 37.9
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.5e-82 309.7 472 40.0
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 5.9e-82 309.3 572 35.5
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.0e-81 308.5 573 34.4
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 2.9e-81 307.0 534 36.5
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 7.2e-80 302.4 439 39.9
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 9.5e-80 302.0 534 36.1
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.2e-79 301.6 534 36.1
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 4.7e-79 299.7 571 34.5
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.3e-78 297.4 594 35.4
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-77 295.0 563 35.0
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 2.0e-77 294.3 542 34.7
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.0e-77 294.3 532 36.3
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 9.8e-77 292.0 448 40.2
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 6.3e-76 289.3 164 92.1
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.8e-75 287.7 415 40.7
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.6e-74 284.6 357 44.3
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 7.8e-74 282.3 576 33.0
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 2.5e-72 277.3 463 38.9
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 3.6e-71 273.5 378 44.2
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 4.4e-69 266.5 461 36.2
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.1e-62 245.4 258 48.1
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.2e-55 221.9 250 45.2
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.8e-54 218.0 410 32.4
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 6.8e-54 216.1 585 29.2
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 7.1e-51 206.1 539 30.4
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.2e-50 205.3 425 34.4
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 5.1e-41 173.3 245 38.4
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.1e-39 167.9 320 34.7
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 5.8e-37 159.8 339 32.4
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.7e-36 158.3 375 29.6
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.6e-34 151.8 246 35.4
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 8.7e-33 146.0 572 25.2
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.8e-30 138.3 246 38.6
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.4e-30 137.9 254 39.4
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 2.7e-26 124.4 433 25.2
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 6.0e-26 123.2 530 25.1
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.3e-24 117.5 147 44.9
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.6e-24 116.7 147 44.2
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 6.2e-23 113.2 173 38.2
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.1e-22 110.9 164 39.6
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.2e-21 109.0 130 43.8
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 3.4e-21 107.5 525 21.9
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.0e-20 105.9 539 21.2
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.5e-18 97.4 213 35.7
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.3e-17 94.7 95 56.8
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-16 92.4 134 38.1
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.3e-16 90.9 125 42.4
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 5.7e-16 90.1 530 22.1
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 7.4e-16 89.7 74 59.5
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.3e-15 89.0 155 33.5
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 4.8e-15 87.0 123 43.1
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.8e-14 85.1 156 38.5
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.0e-14 82.8 110 41.8
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.5e-13 80.5 101 41.6
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 7.6e-13 79.7 175 29.1
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.7e-12 78.6 116 44.8
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 3.8e-12 77.4 160 30.0
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.8e-12 77.4 93 44.1
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 9.3e-11 72.8 124 31.5
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 6.1e-10 70.1 176 30.7
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 2.3e-09 68.2 63 54.0
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 3.0e-09 67.8 130 29.2
A07p22200 Brassica napus HOM05D003578 ORTHO05D004021 1.5e-08 65.5 38 97.4
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 9.7e-08 62.8 67 44.8
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.6e-07 62.0 170 31.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.8e-07 61.2 63 49.2
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 8.2e-07 59.7 112 33.9


User provided reference genes

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