Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 1.1e-201 706.4 368 100.0
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 6.6e-170 600.9 402 83.1
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 6.6e-170 600.9 402 83.1
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 4.7e-160 568.2 432 75.7
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 4.3e-153 545.0 413 75.1
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 6.2e-152 541.2 414 74.4
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 1.8e-151 539.7 387 75.2
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 2.4e-151 539.3 409 74.3
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 4.4e-150 535.0 408 74.0
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 3.8e-149 531.9 419 72.6
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 3.0e-146 522.3 410 74.1
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 3.9e-146 521.9 417 71.7
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 1.9e-145 519.6 401 73.3
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 4.8e-144 515.0 417 70.7
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 1.8e-143 513.1 408 72.1
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 3.1e-143 512.3 299 90.6
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 3.1e-143 512.3 299 90.6
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.1e-140 503.8 368 73.4
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.6e-128 463.4 371 66.8
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 1.8e-122 443.4 369 64.2
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.1e-116 424.1 369 61.2
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.5e-116 422.9 369 61.0
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 3.2e-116 422.5 369 61.0
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 1.2e-115 420.6 368 59.8
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.4e-114 417.2 366 60.9
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.8e-114 416.8 359 60.7
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 2.3e-114 416.4 372 60.5
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 3.9e-114 415.6 363 60.1
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 8.8e-114 414.5 375 60.3
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 8.8e-114 414.5 369 59.6
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 4.3e-113 412.1 322 65.8
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 7.4e-113 411.4 376 61.4
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 7.4e-113 411.4 373 59.8
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 9.7e-113 411.0 373 60.1
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 1.7e-112 410.2 362 60.2
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 2.2e-112 409.8 366 59.3
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 2.8e-112 409.5 364 60.4
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 3.7e-112 409.1 370 60.8
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 3.7e-112 409.1 373 60.1
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 8.2e-112 407.9 360 60.0
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.8e-111 406.8 371 61.2
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 4.1e-111 405.6 363 59.2
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 6.9e-111 404.8 328 64.0
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.5e-110 403.7 385 57.7
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 2.6e-110 402.9 372 59.7
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 2.6e-110 402.9 412 55.8
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 3.4e-110 402.5 366 60.1
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 5.9e-110 401.7 373 59.2
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.3e-109 400.6 374 58.8
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 3.8e-109 399.1 367 60.2
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 3.8e-109 399.1 368 59.5
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 8.5e-109 397.9 359 57.7
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 2.5e-108 396.4 360 58.3
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 2.5e-108 396.4 368 59.2
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 9.4e-108 394.4 428 54.4
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 1.2e-107 394.0 361 60.4
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.6e-107 393.7 404 55.9
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 3.6e-107 392.5 359 57.1
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 3.6e-107 392.5 338 61.5
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 4.7e-107 392.1 318 62.9
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 7.9e-107 391.3 374 59.9
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.4e-106 390.6 325 62.2
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.8e-106 390.2 365 57.5
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 3.0e-106 389.4 376 56.1
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 6.7e-106 388.3 320 61.9
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.5e-105 387.1 407 54.8
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 9.7e-105 384.4 396 54.3
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 2.2e-104 383.3 409 55.0
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 4.8e-104 382.1 368 57.1
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 6.3e-104 381.7 454 51.5
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 8.2e-104 381.3 407 52.8
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 1.1e-103 380.9 363 56.7
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 5.3e-103 378.6 323 60.1
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 7.0e-103 378.3 409 52.6
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 2.0e-102 376.7 386 55.4
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 3.4e-102 375.9 352 58.8
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 2.2e-101 373.2 380 53.7
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 2.9e-101 372.9 411 51.8
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 3.2e-100 369.4 346 56.9
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 1.2e-99 367.5 425 50.8
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 2.1e-99 366.7 348 56.3
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.4e-98 364.0 362 54.7
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.0e-97 360.1 371 52.0
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 2.0e-97 360.1 319 58.0
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 2.6e-97 359.8 301 63.5
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 5.7e-97 358.6 375 54.1
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 9.7e-97 357.8 385 53.0
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.3e-96 357.5 374 53.2
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 2.8e-96 356.3 359 51.8
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 3.7e-96 355.9 312 61.9
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.1e-95 352.8 346 54.3
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 4.1e-95 352.4 362 54.1
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 5.9e-94 348.6 276 65.2
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 5.9e-94 348.6 417 48.7
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.0e-93 347.8 362 55.0
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.2e-92 342.8 348 54.3
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 9.4e-92 341.3 354 54.8
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 2.7e-91 339.7 365 53.2
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.2e-86 324.3 342 53.8
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.2e-86 324.3 342 53.8
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.6e-86 323.9 365 49.9
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.0e-86 323.6 342 53.8
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.7e-86 323.2 342 53.8
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 4.5e-86 322.4 358 51.7
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.8e-85 319.3 342 53.2
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 4.2e-84 315.8 312 52.9
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.2e-83 314.3 358 48.6
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.2e-81 307.8 364 48.4
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 7.5e-81 305.1 364 45.9
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 2.9e-77 293.1 408 43.6
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 6.6e-77 292.0 268 57.5
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 9.5e-68 261.5 320 45.6
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 4.3e-60 236.1 197 61.4
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.1e-53 212.6 282 47.2
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 6.6e-53 212.2 198 53.5
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 4.3e-52 209.5 193 54.9
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 5.2e-50 202.6 161 67.7
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 4.4e-49 199.5 390 34.6
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.7e-48 196.4 193 52.8
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 6.4e-48 195.7 144 69.4
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.6e-43 179.9 149 63.1
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.1e-42 178.3 254 43.7
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.9e-40 169.5 127 63.0
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 4.9e-40 169.5 131 63.4
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.7e-37 161.0 127 66.1
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 6.6e-37 159.1 112 68.8
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 4.2e-23 113.2 79 68.4
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 2.8e-19 100.5 73 67.1
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 6.4e-16 89.4 153 37.3
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 9.6e-12 75.5 67 62.7
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 9.0e-10 68.9 53 66.0
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.7e-08 64.7 89 33.7


User provided reference genes

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