Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 2.9e-222 775.0 424 100.0
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.5e-210 736.1 430 96.0
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.2e-185 652.5 429 85.8
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.5e-181 639.8 428 84.8
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.6e-148 530.0 442 71.5
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 5.3e-147 525.0 425 75.1
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.0e-125 453.4 445 66.1
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.8e-124 449.5 443 65.7
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 8.5e-121 438.0 443 64.3
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.3e-96 356.3 430 54.7
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 9.8e-93 344.7 449 53.5
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.3e-92 344.4 387 59.2
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.7e-92 342.8 453 55.8
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 4.1e-91 339.3 444 51.1
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 7.8e-90 335.1 453 54.5
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 6.2e-87 325.5 441 53.1
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.1e-83 312.8 451 50.3
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 3.6e-79 299.7 407 50.1
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 6.2e-79 298.9 443 48.1
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.1e-75 288.1 406 49.0
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.2e-75 286.6 404 48.3
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 4.1e-75 286.2 404 48.5
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.6e-74 284.3 403 47.9
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 7.8e-74 282.0 409 49.6
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.6e-71 274.2 459 47.5
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.1e-70 271.6 459 46.6
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.9e-68 263.5 447 46.1
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.3e-65 254.6 440 46.6
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 8.1e-63 245.4 462 44.2
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.6e-58 229.6 458 40.6
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 5.1e-57 226.1 464 41.2
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.5e-56 223.8 457 40.0
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 3.3e-56 223.4 464 41.2
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 3.6e-55 219.9 459 40.5
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.2e-53 214.9 422 41.7
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.5e-53 214.5 459 40.3
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.5e-53 214.5 466 38.6
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.5e-53 214.5 463 41.9
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.0e-53 214.2 464 39.7
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 3.4e-53 213.4 460 36.5
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 3.4e-53 213.4 463 39.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 4.5e-53 213.0 467 40.9
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 2.2e-52 210.7 446 38.3
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 6.4e-52 209.1 466 38.4
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 9.3e-51 205.3 469 40.3
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.2e-50 204.9 407 41.0
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 6.0e-50 202.6 467 36.8
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.8e-49 201.1 463 40.8
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.0e-49 200.3 452 38.3
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 9.6e-48 195.3 469 39.9
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.8e-47 193.0 440 39.3
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.8e-47 193.0 440 39.3
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.8e-47 193.0 426 38.3
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.4e-46 191.4 450 36.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.8e-46 191.0 453 36.2
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.2e-45 188.3 435 37.2
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.2e-45 188.3 432 36.3
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.5e-45 188.0 466 36.7
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.5e-45 188.0 467 37.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.0e-45 187.6 455 34.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.0e-45 187.6 467 39.2
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 2.6e-45 187.2 468 34.0
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 7.6e-45 185.7 437 35.2
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 9.9e-45 185.3 415 37.8
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.9e-45 185.3 425 37.2
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.9e-45 185.3 468 38.0
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.3e-44 184.9 444 34.2
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 3.8e-44 183.3 470 39.1
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.8e-44 183.3 464 37.3
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 6.4e-44 182.6 462 39.4
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.9e-43 181.0 455 37.6
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 5.5e-43 179.5 467 39.4
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 4.6e-42 176.4 450 34.7
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 6.0e-42 176.0 427 38.4
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 7.9e-42 175.6 467 38.1
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 7.9e-42 175.6 445 37.1
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.8e-41 174.5 445 33.7
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.8e-41 174.5 467 34.5
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 5.1e-41 172.9 463 34.6
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 6.7e-41 172.6 481 36.0
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 8.7e-41 172.2 432 36.1
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 8.7e-41 172.2 454 37.4
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 9.6e-40 168.7 473 33.2
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.3e-39 168.3 446 35.7
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.6e-39 167.9 418 37.6
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.1e-39 167.5 411 35.5
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.1e-39 167.5 438 37.0
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 3.7e-39 166.8 424 38.2
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 3.7e-39 166.8 462 37.0
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 6.2e-39 166.0 443 36.6
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 8.2e-39 165.6 436 36.7
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.4e-38 164.9 481 35.3
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.4e-38 164.9 422 33.2
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.8e-38 164.5 475 33.5
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.4e-38 164.1 439 38.5
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.4e-38 164.1 465 35.7
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 5.3e-38 162.9 450 35.3
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.9e-38 162.5 439 37.1
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 6.9e-38 162.5 462 34.4
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 9.0e-38 162.2 422 35.1
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 9.0e-38 162.2 439 37.8
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 9.0e-38 162.2 468 34.4
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.5e-37 161.4 445 34.6
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 1.5e-37 161.4 427 35.8
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 2.6e-37 160.6 443 37.5
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.9e-36 157.1 444 32.9
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 6.5e-36 156.0 441 34.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 2.5e-35 154.1 465 32.3
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 2.5e-35 154.1 457 37.6
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.2e-35 153.7 430 36.0
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.2e-34 151.8 451 31.7
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.6e-34 151.4 455 32.1
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 3.5e-34 150.2 457 37.9
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 3.5e-34 150.2 453 34.4
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.0e-33 147.1 421 32.5
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.5e-32 144.8 466 33.3
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 2.2e-31 141.0 452 34.5
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 2.6e-29 134.0 302 38.4
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.4e-27 128.3 355 33.2
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 2.5e-27 127.5 449 30.5
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 4.2e-27 126.7 419 29.6
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 5.5e-27 126.3 450 34.2
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 4.6e-26 123.2 155 46.5
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 6.1e-26 122.9 428 34.3
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.8e-25 121.3 465 32.5
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 5.1e-25 119.8 429 29.8
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 8.8e-25 119.0 423 34.0
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 2.0e-24 117.9 390 30.3
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.5e-24 117.5 429 30.5
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.3e-23 115.2 412 30.8
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.8e-23 114.0 416 28.8
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 8.2e-23 112.5 412 30.8
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 3.1e-22 110.5 58 98.3
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 4.1e-22 110.2 412 30.6
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 5.3e-22 109.8 445 29.7
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.6e-21 107.5 137 49.6
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 3.2e-19 100.5 177 42.4
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 7.2e-19 99.4 294 31.3
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-18 97.8 147 49.7
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.0e-17 95.5 214 39.3
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.1e-17 93.2 386 33.2
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 5.7e-16 89.7 350 30.6
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.7e-15 88.2 109 41.3
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 1.1e-14 85.5 262 31.7
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.4e-14 85.1 433 27.5
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.8e-14 84.7 247 34.0
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.8e-14 84.7 292 28.8
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.8e-14 84.7 153 33.3
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 3.1e-14 84.0 401 26.7
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 4.1e-14 83.6 310 30.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.0e-12 79.0 170 33.5
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.3e-12 78.6 275 32.7
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.9e-12 77.4 269 34.2
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 1.5e-11 75.1 59 59.3
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 9.4e-11 72.4 419 25.8
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.2e-10 72.0 110 40.0
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.1e-10 71.2 103 38.8
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-10 71.2 118 33.1
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 4.7e-10 70.1 124 41.1
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 6.1e-10 69.7 227 29.1
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 8.0e-10 69.3 91 50.5
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.4e-09 68.6 110 40.0
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.8e-09 68.2 102 38.2
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 2.3e-09 67.8 287 29.6
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-08 65.5 46 67.4
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 2.8e-07 60.8 103 42.7
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 3.7e-07 60.5 68 47.1
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 4.8e-07 60.1 102 34.3
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.1e-06 58.9 410 24.1
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 5.3e-06 56.6 121 37.2


User provided reference genes

Program Settings