Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44599 Brassica carinata HOM05D000237 ORTHO05D024009 4.9e-54 214.2 104 100.0
BcaC04g18831 Brassica carinata HOM05D000237 ORTHO05D024009 3.9e-51 204.5 104 96.2
C06p20710 Brassica napus HOM05D000237 ORTHO05D024009 5.1e-35 151.0 73 100.0
BolC6t37254H Brassica oleracea HOM05D000237 ORTHO05D024009 5.1e-35 151.0 73 100.0
A02p00520 Brassica napus HOM05D000237 ORTHO05D000535 2.5e-18 95.5 98 59.2
BraA02t05036Z Brassica rapa HOM05D000237 ORTHO05D000535 3.3e-18 95.1 98 59.2
Sp6g32910 Schrenkiella parvula HOM05D000237 ORTHO05D000535 9.7e-18 93.6 98 59.2
BolC2t06411H Brassica oleracea HOM05D000237 ORTHO05D000535 2.2e-17 92.4 145 44.1
Thhalv10013425m.g Eutrema salsugineum HOM05D000237 ORTHO05D000535 2.2e-17 92.4 98 59.2
C09p66740 Brassica napus HOM05D000237 ORTHO05D000535 2.8e-17 92.0 100 60.0
BolC9t59455H Brassica oleracea HOM05D000237 ORTHO05D000535 2.8e-17 92.0 100 60.0
C02p04510 Brassica napus HOM05D000237 ORTHO05D000535 1.1e-16 90.1 145 43.4
A10p27050 Brassica napus HOM05D000237 ORTHO05D000535 1.4e-16 89.7 100 58.0
BraA10t44757Z Brassica rapa HOM05D000237 ORTHO05D000535 1.4e-16 89.7 100 58.0
BcaB08g37090 Brassica carinata HOM05D000237 ORTHO05D000535 1.8e-16 89.4 99 58.6
Carub.0006s0900 Capsella rubella HOM05D000237 ORTHO05D000535 3.1e-16 88.6 98 57.1
CARHR202770 Cardamine hirsuta HOM05D000237 ORTHO05D000535 3.1e-16 88.6 92 58.7
CARHR279510 Cardamine hirsuta HOM05D000237 ORTHO05D000535 3.1e-16 88.6 145 41.4
Sp2g28630 Schrenkiella parvula HOM05D000237 ORTHO05D000535 5.3e-16 87.8 145 40.7
Aa31LG1G16480 Aethionema arabicum HOM05D000237 ORTHO05D000535 6.9e-16 87.4 145 40.7
AL6G21040 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 2.6e-15 85.5 98 57.1
BcaC03g13315 Brassica carinata HOM05D000237 ORTHO05D000535 4.5e-15 84.7 98 55.1
AT5G10520 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 2.9e-14 82.0 98 55.1
Carub.0008s2639 Capsella rubella HOM05D000237 ORTHO05D000535 5.0e-14 81.3 88 54.5
BcaB05g21487 Brassica carinata HOM05D000237 ORTHO05D000535 1.9e-13 79.3 98 53.1
Duzib187G1094 Durio zibethinus HOM05D000237 ORTHO05D000535 5.5e-13 77.8 135 38.5
BcaC03g18342 Brassica carinata HOM05D000237 ORTHO05D000535 7.2e-13 77.4 145 39.3
BraA02t09323Z Brassica rapa HOM05D000237 ORTHO05D000535 1.2e-12 76.6 143 39.2
AT5G65530 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 2.7e-12 75.5 144 38.2
BcaNung06931 Brassica carinata HOM05D000237 ORTHO05D000535 2.7e-12 75.5 145 37.2
C02p64220 Brassica napus HOM05D000237 ORTHO05D000535 2.7e-12 75.5 143 38.5
BolC2t12485H Brassica oleracea HOM05D000237 ORTHO05D000535 2.7e-12 75.5 143 38.5
BcaC01g02785 Brassica carinata HOM05D000237 ORTHO05D000535 4.6e-12 74.7 147 37.4
C03p60450 Brassica napus HOM05D000237 ORTHO05D000535 4.6e-12 74.7 147 37.4
BolC3t18306H Brassica oleracea HOM05D000237 ORTHO05D000535 4.6e-12 74.7 147 37.4
A02p43990 Brassica napus HOM05D000237 ORTHO05D000535 6.1e-12 74.3 143 37.8
A06p32380 Brassica napus HOM05D000237 ORTHO05D000535 6.1e-12 74.3 144 38.2
AL8G43120 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 1.4e-11 73.2 144 37.5
BraA06t26163Z Brassica rapa HOM05D000237 ORTHO05D000535 1.4e-11 73.2 144 36.8
Thecc.01G089200 Theobroma cacao HOM05D000237 ORTHO05D000535 1.4e-11 73.2 144 35.4
COL.COLO4_27368 Corchorus olitorius HOM05D000237 ORTHO05D000535 3.0e-11 72.0 144 35.4
Gohir.A12G084700 Gossypium hirsutum HOM05D000237 ORTHO05D000535 3.0e-11 72.0 144 34.0
Gorai.008G092900 Gossypium raimondii HOM05D000237 ORTHO05D000535 3.9e-11 71.6 144 34.0
Cpa.g.sc55.14 Carica papaya HOM05D000237 ORTHO05D000535 8.8e-11 70.5 141 36.2
Aa31LG3G16630 Aethionema arabicum HOM05D000237 ORTHO05D000535 1.1e-10 70.1 98 49.0
Duzib147G1415 Durio zibethinus HOM05D000237 ORTHO05D000535 3.3e-10 68.6 144 35.4
ClCG10G007810 Citrullus lanatus HOM05D000237 ORTHO05D000535 4.3e-10 68.2 147 33.3
TWI53G0844 Tripterygium wilfordii HOM05D000237 ORTHO05D000535 4.3e-10 68.2 144 33.3
MELO3C014969.2 Cucumis melo HOM05D000237 ORTHO05D000535 7.4e-10 67.4 147 33.3
Eucgr.I00565 Eucalyptus grandis HOM05D000237 ORTHO05D000535 9.7e-10 67.0 144 31.9
TAR628G1011 Trochodendron aralioides HOM05D000237 ORTHO05D000535 9.7e-10 67.0 144 34.7
CANSAT01G1388 Cannabis sativa HOM05D000237 ORTHO05D000535 2.2e-09 65.9 146 34.9
Ca_22693_v3 Cicer arietinum L. HOM05D000237 ORTHO05D000535 2.2e-09 65.9 145 33.1
Lalb_Chr16g0381601 Lupinus albus HOM05D000237 ORTHO05D000535 2.2e-09 65.9 144 31.9
Ciclev10025570m.g Citrus clementina HOM05D000237 ORTHO05D000535 3.7e-09 65.1 143 32.9
Glyma.18G148100 Glycine max HOM05D000237 ORTHO05D000535 3.7e-09 65.1 145 32.4
CsaV3_3G006920 Cucumis sativus L. HOM05D000237 ORTHO05D000535 4.8e-09 64.7 147 33.3
CiPaw.07G046400 Carya illinoinensis HOM05D000237 ORTHO05D000535 8.2e-09 63.9 144 31.9
Eucgr.H04720 Eucalyptus grandis HOM05D000237 ORTHO05D000535 8.2e-09 63.9 144 32.6
MD01G1040800 Malus domestica HOM05D000237 ORTHO05D000535 8.2e-09 63.9 145 33.8
Lsat_1_v5_gn_2_70180 Lactuca sativa HOM05D000237 ORTHO05D000535 1.1e-08 63.5 144 29.9
RcHm_v2.0_Chr2g0111001 Rosa chinensis HOM05D000237 ORTHO05D000535 1.1e-08 63.5 145 33.1
Sabra07G0009100 Salix brachista HOM05D000237 ORTHO05D000535 1.1e-08 63.5 144 32.6
VMungo0251G2664 Vigna mungo HOM05D000237 ORTHO05D000535 1.4e-08 63.2 145 32.4
Haze_03886 Corylus avellana HOM05D000237 ORTHO05D000535 1.8e-08 62.8 146 33.6
Phvul.003G288300 Phaseolus vulgaris HOM05D000237 ORTHO05D000535 2.4e-08 62.4 145 31.7
Dinv13590 Davidia involucrata HOM05D000237 ORTHO05D000535 3.1e-08 62.0 144 32.6
MD15G1310700 Malus domestica HOM05D000237 ORTHO05D000535 3.1e-08 62.0 145 33.1
arahy.Tifrunner.gnm1.ann1.4I9AI1 Arachis hypogaea HOM05D000237 ORTHO05D000535 4.1e-08 61.6 145 30.3
arahy.Tifrunner.gnm1.ann1.BLG1SA Arachis hypogaea HOM05D000237 ORTHO05D000535 4.1e-08 61.6 145 30.3
C03p79340 Brassica napus HOM05D000237 ORTHO05D103046 4.1e-08 61.6 60 60.0
Lj2g0025986 Lotus japonicus HOM05D000237 ORTHO05D000535 4.1e-08 61.6 145 31.0
QL06p035923 Quercus lobata HOM05D000237 ORTHO05D000535 4.1e-08 61.6 144 31.9
CSS0025400 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 5.3e-08 61.2 144 32.6
CSS0049382 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 5.3e-08 61.2 144 32.6
Manes.12G125400 Manihot esculenta HOM05D000237 ORTHO05D000535 5.3e-08 61.2 144 31.2
Sed0020645 Sechium edule HOM05D000237 ORTHO05D000535 9.1e-08 60.5 146 30.1
FAN26G0707 Fragaria x ananassa HOM05D000237 ORTHO05D000535 1.2e-07 60.1 145 32.4
Nitab4.5_0003930g0010 Nicotiana tabacum HOM05D000237 ORTHO05D000535 1.2e-07 60.1 141 31.2
Phvul.002G146300 Phaseolus vulgaris HOM05D000237 ORTHO05D000535 1.2e-07 60.1 145 31.0
Migut.H02286 Erythranthe guttata HOM05D000237 ORTHO05D000535 1.5e-07 59.7 144 31.2
Glyma.01G022400 Glycine max HOM05D000237 ORTHO05D000535 1.5e-07 59.7 145 31.0
CAN.G1344.23 Capsicum annuum HOM05D000237 ORTHO05D000535 2.0e-07 59.3 144 29.9
Glyma.09G199900 Glycine max HOM05D000237 ORTHO05D000535 2.0e-07 59.3 146 30.1
Lj4g0004729 Lotus japonicus HOM05D000237 ORTHO05D000535 2.0e-07 59.3 85 42.4
Potri.007G011700 Populus trichocarpa HOM05D000237 ORTHO05D000535 2.0e-07 59.3 144 31.2
Atru.chr3.1233 Acer truncatum HOM05D000237 ORTHO05D000535 2.6e-07 58.9 143 32.2
Glyma.08G278700 Glycine max HOM05D000237 ORTHO05D000535 2.6e-07 58.9 95 38.9
Gohir.A11G207300 Gossypium hirsutum HOM05D000237 ORTHO05D000535 2.6e-07 58.9 144 31.9
HanXRQChr07g0188791 Helianthus annuus HOM05D000237 ORTHO05D000535 2.6e-07 58.9 144 30.6
Rhsim08G0017100 Rhododendron simsii HOM05D000237 ORTHO05D000535 2.6e-07 58.9 144 31.2
SalBow5G1907 Salvia bowleyana HOM05D000237 ORTHO05D000535 3.4e-07 58.5 145 29.7
SalBow5G3717 Salvia bowleyana HOM05D000237 ORTHO05D000535 3.4e-07 58.5 145 29.7
VMungo1215G0441 Vigna mungo HOM05D000237 ORTHO05D000535 3.4e-07 58.5 145 29.7
FvH4_1g19500 Fragaria vesca HOM05D000237 ORTHO05D000535 4.5e-07 58.2 145 31.7
Nitab4.5_0010932g0020 Nicotiana tabacum HOM05D000237 ORTHO05D000535 4.5e-07 58.2 77 42.9
CiPaw.08G140900 Carya illinoinensis HOM05D000237 ORTHO05D000535 5.9e-07 57.8 144 30.6
FAN19G1859 Fragaria x ananassa HOM05D000237 ORTHO05D000535 5.9e-07 57.8 145 31.7
FAN28G2989 Fragaria x ananassa HOM05D000237 ORTHO05D000535 5.9e-07 57.8 145 31.7
Gorai.007G232200 Gossypium raimondii HOM05D000237 ORTHO05D000535 5.9e-07 57.8 144 31.9
Solyc11g010730.3 Solanum lycopersicum HOM05D000237 ORTHO05D000535 5.9e-07 57.8 144 30.6
Sopen11g005540 Solanum pennellii HOM05D000237 ORTHO05D000535 5.9e-07 57.8 144 30.6
PGSC0003DMG400016126 Solanum tuberosum HOM05D000237 ORTHO05D000535 5.9e-07 57.8 144 30.6
MSTRG.23383 Avicennia marina HOM05D000237 ORTHO05D000535 7.7e-07 57.4 144 29.9
Lalb_Chr05g0216421 Lupinus albus HOM05D000237 ORTHO05D000535 7.7e-07 57.4 144 29.2
Gohir.D11G216000 Gossypium hirsutum HOM05D000237 ORTHO05D000535 1.0e-06 57.0 144 31.2
Lj2A533G45 Lonicera japonica HOM05D000237 ORTHO05D000535 1.0e-06 57.0 145 28.3
Cfa006873 Carpinus fangiana HOM05D000237 ORTHO05D000535 1.3e-06 56.6 147 33.3
ECA232G1016 Erigeron canadensis HOM05D000237 ORTHO05D000535 1.3e-06 56.6 143 29.4
Medtr5g031870 Medicago truncatula HOM05D000237 ORTHO05D000535 1.3e-06 56.6 145 29.0
Sc16g0000580 Simmondsia chinensis HOM05D000237 ORTHO05D000535 1.3e-06 56.6 146 29.5
GSVIVG01002864001 Vitis vinifera HOM05D000237 ORTHO05D000535 1.3e-06 56.6 144 31.9
GSVIVG01004383001 Vitis vinifera HOM05D000237 ORTHO05D000535 1.3e-06 56.6 144 31.9
Lalb_Chr05g0228541 Lupinus albus HOM05D000237 ORTHO05D000535 1.7e-06 56.2 85 36.5
Oeu046552.2 Olea europaea HOM05D000237 ORTHO05D000535 1.7e-06 56.2 144 28.5
vmacro18549 Vaccinium macrocarpon HOM05D000237 ORTHO05D000535 1.7e-06 56.2 144 30.6
Gohir.D03G035400 Gossypium hirsutum HOM05D000237 ORTHO05D000535 2.2e-06 55.8 146 29.5
Gorai.003G037000 Gossypium raimondii HOM05D000237 ORTHO05D000535 2.2e-06 55.8 146 29.5
AUR62003674 Chenopodium quinoa HOM05D000237 ORTHO05D000535 2.9e-06 55.5 146 27.4
Gohir.A02G145200 Gossypium hirsutum HOM05D000237 ORTHO05D000535 2.9e-06 55.5 146 29.5
Sc03g0000420 Simmondsia chinensis HOM05D000237 ORTHO05D000535 2.9e-06 55.5 145 29.7
THA.LOC104801679 Tarenaya hassleriana HOM05D000237 ORTHO05D024009 2.9e-06 55.5 83 47.0
Cc07_g13990 Coffea canephora HOM05D000237 ORTHO05D000535 3.8e-06 55.1 144 29.2
Peaxi162Scf00085g02210 Petunia axillaris HOM05D000237 ORTHO05D000535 3.8e-06 55.1 141 31.9
Oeu017107.3 Olea europaea HOM05D000237 ORTHO05D000535 5.0e-06 54.7 144 28.5
AUR62017984 Chenopodium quinoa HOM05D000237 ORTHO05D000535 6.5e-06 54.3 146 27.4
Nn5g29853 Nelumbo nucifera HOM05D000237 ORTHO05D000535 6.5e-06 54.3 148 28.4
Rhsim10G0173600 Rhododendron simsii HOM05D000237 ORTHO05D000535 6.5e-06 54.3 146 31.5


User provided reference genes

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