Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44593 Brassica carinata HOM05D002205 ORTHO05D017586 2.9e-105 385.2 187 100.0
C06p20640 Brassica napus HOM05D002205 ORTHO05D017586 1.1e-101 373.2 207 90.3
BcaC03g15881 Brassica carinata HOM05D003212 ORTHO05D017586 3.5e-95 351.7 176 97.2
C02p36490 Brassica napus HOM05D002205 ORTHO05D017586 6.9e-91 337.4 196 86.2
BolC6t37247H Brassica oleracea HOM05D003212 ORTHO05D017586 1.5e-66 256.5 150 86.7
BolC2t09647H Brassica oleracea HOM05D003212 ORTHO05D017586 2.0e-42 176.4 96 90.6
C08p27660 Brassica napus HOM05D002205 ORTHO05D018573 8.3e-28 127.9 122 59.0
BcaC03g14864 Brassica carinata HOM05D002205 ORTHO05D018573 1.4e-27 127.1 122 58.2
BolC8t50387H Brassica oleracea HOM05D002205 ORTHO05D018573 1.4e-27 127.1 122 59.0
A02p18250 Brassica napus HOM05D002205 ORTHO05D018573 2.7e-26 122.9 149 53.7
BcaC07g39606 Brassica carinata HOM05D002205 ORTHO05D018573 6.6e-25 118.2 117 58.1
C02p23320 Brassica napus HOM05D002205 ORTHO05D018573 9.5e-24 114.4 108 58.3
BraA10t43114Z Brassica rapa HOM05D002205 ORTHO05D017586 2.1e-23 113.2 59 88.1
BcaC05g27062 Brassica carinata HOM05D002205 ORTHO05D004847 2.8e-23 112.8 125 52.0
C05p29210 Brassica napus HOM05D002205 ORTHO05D004847 2.8e-23 112.8 125 52.0
BolC5t31653H Brassica oleracea HOM05D002205 ORTHO05D004847 2.8e-23 112.8 125 52.0
BcaB07g32640 Brassica carinata HOM05D002205 ORTHO05D004847 4.7e-23 112.1 125 51.2
A07p39660 Brassica napus HOM05D002205 ORTHO05D018573 1.4e-22 110.5 109 57.8
A10p19760 Brassica napus HOM05D002205 ORTHO05D018573 1.4e-22 110.5 109 57.8
Sp1g26160 Schrenkiella parvula HOM05D002205 ORTHO05D004847 2.3e-22 109.8 125 52.0
A09p36150 Brassica napus HOM05D002205 ORTHO05D004847 4.0e-22 109.0 125 51.2
BraA09t39142Z Brassica rapa HOM05D002205 ORTHO05D004847 4.0e-22 109.0 125 51.2
CARHR029690 Cardamine hirsuta HOM05D002205 ORTHO05D004847 8.9e-22 107.8 125 51.2
Thhalv10008197m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 1.2e-21 107.5 125 50.4
AT1G30300 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 1.5e-21 107.1 125 50.4
AL1G44250 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 4.4e-21 105.5 125 49.6
A08p24530 Brassica napus HOM05D002205 ORTHO05D004847 4.4e-21 105.5 125 51.2
BraA08t34409Z Brassica rapa HOM05D002205 ORTHO05D004847 4.4e-21 105.5 125 51.2
BcaC01g00182 Brassica carinata HOM05D002205 ORTHO05D004847 7.5e-21 104.8 125 50.4
BolC3t19922H Brassica oleracea HOM05D002205 ORTHO05D004847 7.5e-21 104.8 125 50.4
FAN21G0057 Fragaria x ananassa HOM05D002205 ORTHO05D004847 9.8e-21 104.4 118 50.0
Aa31LG6G5440 Aethionema arabicum HOM05D002205 ORTHO05D004847 1.3e-20 104.0 118 51.7
BcaB03g12208 Brassica carinata HOM05D002205 ORTHO05D004847 2.2e-20 103.2 125 50.4
C03p76660 Brassica napus HOM05D002205 ORTHO05D004847 2.9e-20 102.8 125 49.6
Carub.0001s2853 Capsella rubella HOM05D002205 ORTHO05D004847 2.9e-20 102.8 125 49.6
VMungo0540G1690 Vigna mungo HOM05D002205 ORTHO05D004847 4.9e-20 102.1 118 49.2
FAN25G1086 Fragaria x ananassa HOM05D002205 ORTHO05D004847 6.4e-20 101.7 116 50.0
Phvul.006G168145 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 6.4e-20 101.7 118 50.0
FAN11G0257 Fragaria x ananassa HOM05D002205 ORTHO05D004847 1.1e-19 100.9 118 48.3
Glyma.13G221800 Glycine max HOM05D002205 ORTHO05D004847 1.1e-19 100.9 130 49.2
Glyma.15G090400 Glycine max HOM05D002205 ORTHO05D004847 1.4e-19 100.5 137 47.4
Ciclev10015916m.g Citrus clementina HOM05D002205 ORTHO05D004847 2.4e-19 99.8 115 50.4
TPR.G26265 Trifolium pratense HOM05D002205 ORTHO05D004847 3.2e-19 99.4 118 49.2
Lj6g0014068 Lotus japonicus HOM05D002205 ORTHO05D004847 7.1e-19 98.2 125 46.4
Lalb_Chr15g0086621 Lupinus albus HOM05D002205 ORTHO05D004847 7.1e-19 98.2 116 50.0
Ca_00510_v3 Cicer arietinum L. HOM05D002205 ORTHO05D004847 9.2e-19 97.8 118 48.3
Cpa.g.sc17.50 Carica papaya HOM05D002205 ORTHO05D004847 1.6e-18 97.1 118 49.2
GSVIVG01021548001 Vitis vinifera HOM05D002205 ORTHO05D004847 1.6e-18 97.1 130 47.7
Zm00001eb031800 Zea mays HOM05D002205 ORTHO05D004847 1.6e-18 97.1 130 46.2
Lj4g0000856 Lotus japonicus HOM05D002205 ORTHO05D004847 2.1e-18 96.7 118 49.2
MBI18_g11219_MAGBIO Magnolia biondii HOM05D002205 ORTHO05D004847 2.7e-18 96.3 120 45.8
TWI09G0418 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 2.7e-18 96.3 118 46.6
arahy.Tifrunner.gnm1.ann1.4B2CWV Arachis hypogaea HOM05D002205 ORTHO05D004847 3.5e-18 95.9 130 46.2
arahy.Tifrunner.gnm1.ann1.WT34VK Arachis hypogaea HOM05D002205 ORTHO05D004847 3.5e-18 95.9 130 46.2
CiPaw.09G119700 Carya illinoinensis HOM05D002205 ORTHO05D004847 3.5e-18 95.9 115 47.0
Gohir.A06G139900 Gossypium hirsutum HOM05D002205 ORTHO05D004847 3.5e-18 95.9 145 40.7
Gohir.D06G144600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 3.5e-18 95.9 145 40.7
Gorai.010G168300 Gossypium raimondii HOM05D002205 ORTHO05D004847 3.5e-18 95.9 145 40.7
Medtr2g018660 Medicago truncatula HOM05D002205 ORTHO05D004847 3.5e-18 95.9 118 47.5
Psat1g192120 Pisum sativum HOM05D002205 ORTHO05D004847 4.6e-18 95.5 118 47.5
COL.COLO4_31010 Corchorus olitorius HOM05D002205 ORTHO05D004847 6.0e-18 95.1 115 47.8
Oeu015213.1 Olea europaea HOM05D002205 ORTHO05D004847 6.0e-18 95.1 115 48.7
PSO541G1418 Papaver somniferum HOM05D002205 ORTHO05D004847 6.0e-18 95.1 118 45.8
PGR083G2813 Punica granatum HOM05D002205 ORTHO05D004847 6.0e-18 95.1 115 48.7
Ah.14g086280 Amaranthus hybridus HOM05D002205 ORTHO05D004847 7.8e-18 94.7 117 47.0
Glyma.05G143300 Glycine max HOM05D002205 ORTHO05D004847 7.8e-18 94.7 130 47.7
Hma1.2p1_0318F.1_g123750 Hydrangea macrophylla HOM05D002205 ORTHO05D004847 7.8e-18 94.7 122 47.5
Manes.17G074200 Manihot esculenta HOM05D002205 ORTHO05D004847 7.8e-18 94.7 118 47.5
TWI73G0911 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 7.8e-18 94.7 118 45.8
Aqoxy1G01658 Aquilegia oxysepala HOM05D002205 ORTHO05D004847 1.3e-17 94.0 116 46.6
Atru.chr10.1082 Acer truncatum HOM05D002205 ORTHO05D004847 1.7e-17 93.6 118 44.1
CANSAT35G0337 Cannabis sativa HOM05D002205 ORTHO05D004847 2.3e-17 93.2 115 47.8
FAN16G1117 Fragaria x ananassa HOM05D002205 ORTHO05D004847 2.3e-17 93.2 134 43.3
Cfa000899 Carpinus fangiana HOM05D002205 ORTHO05D004847 3.0e-17 92.8 115 47.0
Sc05g0005980 Simmondsia chinensis HOM05D002205 ORTHO05D004847 3.0e-17 92.8 115 47.8
RcHm_v2.0_Chr5g0014931 Rosa chinensis HOM05D002205 ORTHO05D004847 5.1e-17 92.0 118 46.6
CDE05G1148 Ceratophyllum demersum HOM05D002205 ORTHO05D004847 6.6e-17 91.7 116 47.4
Nn3g20332 Nelumbo nucifera HOM05D002205 ORTHO05D004847 8.6e-17 91.3 118 44.9
Prupe.4G085600 Prunus persica HOM05D002205 ORTHO05D004847 8.6e-17 91.3 115 45.2
AUR62030135 Chenopodium quinoa HOM05D002205 ORTHO05D004847 1.1e-16 90.9 125 44.0
MSTRG.7513 Avicennia marina HOM05D002205 ORTHO05D004847 1.5e-16 90.5 124 44.4
Potri.011G081600 Populus trichocarpa HOM05D002205 ORTHO05D004847 1.9e-16 90.1 115 46.1
EL10Ac8g19627 Beta vulgaris HOM05D002205 ORTHO05D004847 3.3e-16 89.4 115 45.2
MD05G1279500 Malus domestica HOM05D002205 ORTHO05D004847 3.3e-16 89.4 120 43.3
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 4.3e-16 89.0 115 47.0
Dinv21519 Davidia involucrata HOM05D002205 ORTHO05D004847 7.3e-16 88.2 115 46.1
CSS0050225 Camellia sinensis var. sinensis HOM05D002205 ORTHO05D004847 9.5e-16 87.8 103 47.6
Cc00_g02010 Coffea canephora HOM05D002205 ORTHO05D004847 9.5e-16 87.8 145 41.4
Phvul.002G178000 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 9.5e-16 87.8 130 45.4
TAR627G0288 Trochodendron aralioides HOM05D002205 ORTHO05D004847 9.5e-16 87.8 115 45.2
Sed0018506 Sechium edule HOM05D002205 ORTHO05D004847 1.2e-15 87.4 118 43.2
Thecc.06G144400 Theobroma cacao HOM05D002205 ORTHO05D004847 1.2e-15 87.4 115 44.3
BcaC01g06666 Brassica carinata HOM05D002205 ORTHO05D004847 1.6e-15 87.0 120 44.2
Duzib192G0694 Durio zibethinus HOM05D002205 ORTHO05D004847 1.6e-15 87.0 118 42.4
MD10G1258200 Malus domestica HOM05D002205 ORTHO05D004847 1.6e-15 87.0 122 41.8
SGA_v2.0_scaffold120G32940 Striga asiatica HOM05D002205 ORTHO05D004847 1.6e-15 87.0 96 51.0
Gohir.A06G196100 Gossypium hirsutum HOM05D002205 ORTHO05D004847 2.1e-15 86.7 118 43.2
AT4G03610 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 2.8e-15 86.3 118 44.9
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 2.8e-15 86.3 116 43.1
CsaV3_1G036870 Cucumis sativus L. HOM05D002205 ORTHO05D004847 2.8e-15 86.3 118 43.2
VMungo0251G1393 Vigna mungo HOM05D002205 ORTHO05D004847 3.6e-15 85.9 144 41.7
AL6G49170 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 4.7e-15 85.5 118 44.1
C09p02950 Brassica napus HOM05D002205 ORTHO05D004847 4.7e-15 85.5 118 44.1
BraA09t35932Z Brassica rapa HOM05D002205 ORTHO05D004847 4.7e-15 85.5 118 44.1
Gohir.D06G203600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 4.7e-15 85.5 118 42.4
Gorai.010G237500 Gossypium raimondii HOM05D002205 ORTHO05D004847 4.7e-15 85.5 118 42.4
ATR1098G096 Amborella trichopoda HOM05D002205 ORTHO05D004847 6.2e-15 85.1 116 43.1
BcaC03g17911 Brassica carinata HOM05D003212 ORTHO05D017537 6.2e-15 85.1 42 90.5
A09p02870 Brassica napus HOM05D002205 ORTHO05D004847 6.2e-15 85.1 124 42.7
BolC3t15977H Brassica oleracea HOM05D002205 ORTHO05D004847 6.2e-15 85.1 127 41.7
Actinidia13441 Actinidia chinensis HOM05D002205 ORTHO05D004847 1.1e-14 84.3 115 45.2
BcaC04g23959 Brassica carinata HOM05D002205 ORTHO05D004847 1.1e-14 84.3 118 43.2
BolC9t53222H Brassica oleracea HOM05D002205 ORTHO05D004847 1.1e-14 84.3 118 43.2
CARHR252020 Cardamine hirsuta HOM05D002205 ORTHO05D004847 1.1e-14 84.3 118 43.2
MELO3C002770.2 Cucumis melo HOM05D002205 ORTHO05D004847 1.1e-14 84.3 118 43.2
Sp6g03600 Schrenkiella parvula HOM05D002205 ORTHO05D004847 1.1e-14 84.3 118 43.2
BcaB01g02544 Brassica carinata HOM05D002205 ORTHO05D004847 1.4e-14 84.0 130 40.8
Lsat_1_v5_gn_4_29840 Lactuca sativa HOM05D002205 ORTHO05D004847 1.8e-14 83.6 145 38.6
Rhsim13G0117500 Rhododendron simsii HOM05D002205 ORTHO05D004847 1.8e-14 83.6 113 45.1
Sabra11G0065700 Salix brachista HOM05D002205 ORTHO05D004847 1.8e-14 83.6 115 44.3
Hund17750 Selenicereus undatus HOM05D002205 ORTHO05D004847 1.8e-14 83.6 115 42.6
SEGI_24320 Sequoiadendron giganteum HOM05D002205 ORTHO05D004847 1.8e-14 83.6 118 42.4
BraA03t12216Z Brassica rapa HOM05D002205 ORTHO05D004847 2.3e-14 83.2 127 41.7
Sopen08g008680 Solanum pennellii HOM05D002205 ORTHO05D004847 2.3e-14 83.2 96 47.9
C03p36630 Brassica napus HOM05D002205 ORTHO05D004847 3.1e-14 82.8 127 40.9
Duzib235G1243 Durio zibethinus HOM05D002205 ORTHO05D004847 3.1e-14 82.8 115 43.5
Manes.01G173000 Manihot esculenta HOM05D002205 ORTHO05D004847 3.1e-14 82.8 115 43.5
Manes.01G173100 Manihot esculenta HOM05D002205 ORTHO05D004847 3.1e-14 82.8 118 44.9
Nitab4.5_0000315g0040 Nicotiana tabacum HOM05D002205 ORTHO05D004847 3.1e-14 82.8 96 47.9
Nitab4.5_0002071g0030 Nicotiana tabacum HOM05D002205 ORTHO05D004847 3.1e-14 82.8 96 47.9
Actinidia09937 Actinidia chinensis HOM05D002205 ORTHO05D004847 4.0e-14 82.4 115 44.3
Sed0018770 Sechium edule HOM05D002205 ORTHO05D004847 4.0e-14 82.4 144 38.2
arahy.Tifrunner.gnm1.ann1.R7LP1S Arachis hypogaea HOM05D002205 ORTHO05D004847 5.2e-14 82.0 127 38.6
CAN.G103.15 Capsicum annuum HOM05D002205 ORTHO05D004847 5.2e-14 82.0 96 47.9
Solyc08g023500.4 Solanum lycopersicum HOM05D002205 ORTHO05D004847 5.2e-14 82.0 97 47.4
ECA234G0538 Erigeron canadensis HOM05D002205 ORTHO05D004847 8.9e-14 81.3 118 40.7
BcaB01g01908 Brassica carinata HOM05D002205 ORTHO05D004847 1.2e-13 80.9 118 42.4
A03p30340 Brassica napus HOM05D002205 ORTHO05D004847 1.2e-13 80.9 127 40.9
Carub.0006s3345 Capsella rubella HOM05D002205 ORTHO05D004847 1.2e-13 80.9 118 42.4
Eucgr.D00270 Eucalyptus grandis HOM05D002205 ORTHO05D004847 1.2e-13 80.9 145 40.0
Migut.K01167 Erythranthe guttata HOM05D002205 ORTHO05D004847 1.5e-13 80.5 87 49.4
PGSC0003DMG400002293 Solanum tuberosum HOM05D002205 ORTHO05D004847 1.5e-13 80.5 96 46.9
HPP92_018655 Vanilla planifolia HOM05D002205 ORTHO05D004847 2.6e-13 79.7 118 44.9
Peaxi162Scf00045g02427 Petunia axillaris HOM05D002205 ORTHO05D004847 3.4e-13 79.3 96 46.9
Thhalv10028809m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 4.4e-13 79.0 120 40.8
QL05p055095 Quercus lobata HOM05D002205 ORTHO05D004847 5.8e-13 78.6 170 34.1
Rhsim13G0117600 Rhododendron simsii HOM05D002205 ORTHO05D004847 5.8e-13 78.6 122 41.0
HanXRQChr17g0564031 Helianthus annuus HOM05D002205 ORTHO05D004847 7.6e-13 78.2 118 40.7
THA.LOC104812309 Tarenaya hassleriana HOM05D002205 ORTHO05D004847 3.7e-12 75.9 117 40.2
SMO118G0510 Selaginella moellendorffii HOM05D002205 ORTHO05D004847 8.4e-12 74.7 128 42.2
vmacro03432 Vaccinium macrocarpon HOM05D002205 ORTHO05D004847 8.4e-12 74.7 138 35.5
Os03g0643250 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 4.1e-11 72.4 133 37.6
unitig_37.g12087 Utricularia gibba HOM05D002205 ORTHO05D004847 2.1e-10 70.1 115 36.5
DCAR_027888 Daucus carota HOM05D002205 ORTHO05D004847 1.0e-09 67.8 68 51.5
BcaB01g04040 Brassica carinata HOM05D003212 ORTHO05D017537 1.3e-09 67.4 44 75.0
Aa31LG9G8880 Aethionema arabicum HOM05D002205 ORTHO05D004847 2.3e-09 66.6 81 48.1
BcaB05g24115 Brassica carinata HOM05D003212 ORTHO05D017537 3.0e-09 66.2 44 72.7
Dinv32214 Davidia involucrata HOM05D002205 ORTHO05D004847 3.0e-09 66.2 106 41.5
AUR62002680 Chenopodium quinoa HOM05D002205 ORTHO05D004847 8.6e-09 64.7 105 41.0
arahy.Tifrunner.gnm1.ann1.PSQD3A Arachis hypogaea HOM05D002205 ORTHO05D004847 1.1e-08 64.3 104 36.5
BcaC05g27724 Brassica carinata HOM05D003212 ORTHO05D017537 7.3e-08 61.6 44 75.0
C05p37050 Brassica napus HOM05D003212 ORTHO05D017537 7.3e-08 61.6 44 75.0
C09p44450 Brassica napus HOM05D003212 ORTHO05D017537 7.3e-08 61.6 44 75.0
ClCG03G006500 Citrullus lanatus HOM05D002205 ORTHO05D004847 7.3e-08 61.6 169 29.6
Haze_05677 Corylus avellana HOM05D002205 ORTHO05D017586 7.3e-08 61.6 36 72.2
Pp3c3_9110 Physcomitrium patens HOM05D002205 ORTHO05D004847 7.3e-08 61.6 120 32.5
BolC8t52206H Brassica oleracea HOM05D003212 ORTHO05D017537 1.1e-06 57.8 143 34.3
AagrBONN_evm.TU.Sc2ySwM_344.1912 Anthoceros agrestis HOM05D002205 ORTHO05D004847 1.8e-06 57.0 107 38.3
Mapoly0054s0026 Marchantia polymorpha HOM05D002205 ORTHO05D004847 1.8e-06 57.0 126 34.9
BraA10t44669Z Brassica rapa HOM05D003212 ORTHO05D017537 5.2e-06 55.5 44 68.2
Haze_05679 Corylus avellana HOM05D002205 ORTHO05D017586 6.8e-06 55.1 38 65.8


User provided reference genes

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