Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44544 Brassica carinata HOM05D003496 ORTHO05D003909 1.4e-45 186.0 101 100.0
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 1.3e-27 126.3 100 75.0
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 2.2e-27 125.6 100 76.0
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 1.9e-26 122.5 101 74.3
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 1.9e-26 122.5 101 74.3
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 2.5e-26 122.1 101 75.2
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 7.2e-26 120.6 101 73.3
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 1.2e-25 119.8 100 73.0
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 2.7e-25 118.6 101 71.3
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 2.3e-24 115.5 101 70.3
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.9e-24 114.8 101 70.3
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.9e-24 114.8 101 70.3
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 5.1e-24 114.4 101 71.3
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 5.7e-23 110.9 100 66.0
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 1.3e-22 109.8 101 67.3
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 6.3e-22 107.5 98 67.3
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 8.2e-22 107.1 99 62.6
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 2.4e-21 105.5 99 62.6
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 4.1e-21 104.8 99 61.6
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 9.1e-21 103.6 99 60.6
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 2.6e-20 102.1 154 49.4
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 2.6e-20 102.1 99 64.6
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 3.4e-20 101.7 99 59.6
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 4.5e-20 101.3 102 59.8
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 5.9e-20 100.9 99 60.6
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 1.0e-19 100.1 102 57.8
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.3e-19 99.8 99 60.6
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 2.2e-19 99.0 102 56.9
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 1.1e-18 96.7 102 56.9
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 1.9e-18 95.9 99 56.6
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 1.9e-18 95.9 99 56.6
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 2.5e-18 95.5 102 54.9
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 2.5e-18 95.5 101 56.4
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 4.2e-18 94.7 102 55.9
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 5.5e-18 94.4 103 58.3
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 5.5e-18 94.4 103 58.3
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 5.5e-18 94.4 97 59.8
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 7.2e-18 94.0 102 56.9
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 9.4e-18 93.6 102 54.9
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 9.4e-18 93.6 102 54.9
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 9.4e-18 93.6 99 55.6
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 1.2e-17 93.2 99 59.6
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 1.2e-17 93.2 102 55.9
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 1.6e-17 92.8 102 55.9
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 2.1e-17 92.4 102 56.9
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 2.7e-17 92.0 99 54.5
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 3.6e-17 91.7 102 55.9
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 3.6e-17 91.7 101 54.5
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.0e-16 90.1 99 57.6
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 1.0e-16 90.1 102 54.9
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 1.0e-16 90.1 83 68.7
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 1.4e-16 89.7 95 60.0
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.4e-16 89.7 99 57.6
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.4e-16 89.7 99 57.6
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 1.8e-16 89.4 101 54.5
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 2.3e-16 89.0 103 54.4
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 3.0e-16 88.6 103 56.3
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 3.0e-16 88.6 107 53.3
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 5.1e-16 87.8 107 53.3
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 5.1e-16 87.8 107 53.3
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 6.7e-16 87.4 99 54.5
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 8.8e-16 87.0 99 57.6
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 8.8e-16 87.0 99 57.6
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 8.8e-16 87.0 106 53.8
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 8.8e-16 87.0 103 52.4
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 8.8e-16 87.0 103 52.4
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 1.1e-15 86.7 99 55.6
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.1e-15 86.7 102 52.9
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.1e-15 86.7 102 52.9
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 1.1e-15 86.7 102 51.0
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 1.1e-15 86.7 103 53.4
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 1.5e-15 86.3 102 52.9
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.5e-15 86.3 102 52.9
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.5e-15 86.3 102 52.9
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.0e-15 85.9 103 51.5
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 2.0e-15 85.9 95 57.9
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 2.6e-15 85.5 102 52.9
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 3.3e-15 85.1 99 54.5
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 3.3e-15 85.1 102 52.9
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 7.4e-15 84.0 87 65.5
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 7.4e-15 84.0 87 65.5
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 7.4e-15 84.0 97 54.6
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 7.4e-15 84.0 97 55.7
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 9.7e-15 83.6 102 51.0
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 9.7e-15 83.6 102 52.0
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 9.7e-15 83.6 102 52.9
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.3e-14 83.2 102 50.0
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.7e-14 82.8 102 51.0
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 1.7e-14 82.8 103 52.4
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.8e-14 82.0 93 55.9
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 3.7e-14 81.6 102 49.0
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 3.7e-14 81.6 124 46.0
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 4.8e-14 81.3 103 51.5
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 4.8e-14 81.3 99 50.5
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 4.8e-14 81.3 101 53.5
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 6.3e-14 80.9 100 54.0
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 8.2e-14 80.5 99 51.5
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 1.4e-13 79.7 96 54.2
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 1.8e-13 79.3 100 53.0
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 7.0e-13 77.4 102 49.0
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 7.0e-13 77.4 93 52.7
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 1.6e-12 76.3 89 55.1
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 2.6e-12 75.5 102 48.0
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 3.5e-12 75.1 103 47.6
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 1.3e-11 73.2 100 49.0
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 1.3e-11 73.2 103 48.5
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.7e-11 72.8 107 48.6
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 2.9e-11 72.0 137 40.1
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 5.0e-11 71.2 95 50.5
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 8.5e-11 70.5 94 50.0
Haze_22265 Corylus avellana HOM05D003496 ORTHO05D003909 1.5e-10 69.7 70 55.7
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 1.5e-10 69.7 82 52.4
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 1.9e-10 69.3 101 47.5
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 3.2e-10 68.6 102 44.1
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 3.2e-10 68.6 129 40.3
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.2e-10 68.2 94 48.9
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 8.0e-09 63.9 93 47.3
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 4.0e-08 61.6 70 52.9
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 6.7e-08 60.8 66 59.1
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 1.1e-07 60.1 99 42.4
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 5.7e-07 57.8 99 42.4
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 7.5e-07 57.4 50 72.0
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.7e-06 56.2 105 41.9
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 8.2e-06 53.9 51 64.7


User provided reference genes

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