Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 6.3e-35 150.2 75 100.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 6.9e-34 146.7 75 96.0
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 3.0e-29 131.3 75 84.0
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.3e-27 125.9 76 80.3
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 4.8e-27 124.0 75 80.0
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 8.2e-27 123.2 75 82.7
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.8e-26 122.1 75 81.3
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-24 115.9 66 87.9
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 5.0e-24 114.0 71 76.1
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 8.5e-24 113.2 66 86.4
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-24 113.2 66 86.4
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-24 113.2 66 86.4
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-24 113.2 66 86.4
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 8.5e-24 113.2 66 86.4
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-23 112.5 66 84.8
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.9e-23 112.1 66 83.3
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.9e-23 112.1 66 83.3
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.5e-23 111.7 73 75.3
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 3.2e-23 111.3 66 84.8
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 2.7e-22 108.2 66 80.3
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 4.7e-22 107.5 64 85.9
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 6.1e-22 107.1 75 68.0
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.4e-21 105.9 76 71.1
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.4e-21 105.9 75 70.7
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.4e-21 105.9 75 72.0
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 3.9e-21 104.4 76 72.4
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.9e-21 104.4 75 69.3
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 3.9e-21 104.4 75 69.3
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 8.8e-21 103.2 75 65.3
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 2.0e-20 102.1 65 84.6
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 3.3e-20 101.3 70 72.9
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 3.3e-20 101.3 75 68.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.3e-20 101.3 75 68.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.3e-20 101.3 77 70.1
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 7.4e-20 100.1 76 68.4
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 9.7e-20 99.8 69 65.2
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 9.7e-20 99.8 77 68.8
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 9.7e-20 99.8 75 66.7
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 9.7e-20 99.8 66 72.7
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.3e-19 99.4 64 70.3
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.3e-19 99.4 75 66.7
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.3e-19 99.4 76 65.8
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.7e-19 99.0 74 66.2
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 2.2e-19 98.6 70 71.4
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.2e-19 98.6 75 66.7
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 2.8e-19 98.2 75 65.3
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.8e-19 98.2 75 65.3
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 2.8e-19 98.2 77 67.5
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.8e-19 98.2 73 63.0
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 2.8e-19 98.2 75 65.3
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.7e-19 97.8 75 68.0
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 3.7e-19 97.8 75 66.7
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 3.7e-19 97.8 75 66.7
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.7e-19 97.8 73 64.4
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 3.7e-19 97.8 77 67.5
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 4.8e-19 97.4 70 68.6
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.8e-19 97.4 69 69.6
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 4.8e-19 97.4 75 65.3
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 4.8e-19 97.4 53 79.2
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 6.3e-19 97.1 71 73.2
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 6.3e-19 97.1 75 64.0
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 6.3e-19 97.1 66 68.2
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 6.3e-19 97.1 64 70.3
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 8.2e-19 96.7 76 68.4
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.1e-18 96.3 75 64.0
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.1e-18 96.3 76 67.1
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 1.8e-18 95.5 75 64.0
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.8e-18 95.5 75 64.0
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 1.8e-18 95.5 76 67.1
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.8e-18 95.5 73 68.5
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 2.4e-18 95.1 78 65.4
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 2.4e-18 95.1 75 64.0
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 3.1e-18 94.7 49 85.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.1e-18 94.7 73 60.3
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 3.1e-18 94.7 77 64.9
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 7.0e-18 93.6 75 65.3
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 7.0e-18 93.6 75 62.7
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 9.1e-18 93.2 75 64.0
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 9.1e-18 93.2 75 64.0
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 9.1e-18 93.2 75 64.0
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 9.1e-18 93.2 75 64.0
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 9.1e-18 93.2 75 64.0
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 9.1e-18 93.2 75 62.7
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 9.1e-18 93.2 77 66.2
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.2e-17 92.8 78 62.8
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.2e-17 92.8 66 65.2
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.6e-17 92.4 75 62.7
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.6e-17 92.4 75 62.7
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.6e-17 91.7 80 56.2
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 4.5e-17 90.9 79 59.5
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 4.5e-17 90.9 73 61.6
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 4.5e-17 90.9 66 62.1
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 5.9e-17 90.5 50 84.0
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.2e-16 88.6 63 68.3
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 3.8e-16 87.8 75 61.3
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 3.8e-16 87.8 75 60.0
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 5.0e-16 87.4 73 57.5
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 8.5e-16 86.7 62 67.7
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 8.5e-16 86.7 80 60.0
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 8.5e-16 86.7 78 56.4
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 8.5e-16 86.7 78 56.4
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.1e-15 86.3 70 64.3
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 1.1e-15 86.3 78 56.4
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 1.1e-15 86.3 76 63.2
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.1e-15 86.3 75 62.7
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.1e-15 86.3 75 60.0
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 1.1e-15 86.3 74 56.8
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.5e-15 85.9 64 62.5
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.9e-15 85.5 78 53.8
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 2.5e-15 85.1 64 60.9
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 2.5e-15 85.1 80 60.0
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.5e-15 85.1 64 60.9
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 5.5e-15 84.0 73 63.0
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 7.2e-15 83.6 62 64.5
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 7.2e-15 83.6 81 51.9
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 9.4e-15 83.2 72 59.7
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.2e-14 82.8 65 60.0
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.2e-14 82.8 62 64.5
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-14 82.4 78 55.1
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-14 82.4 78 55.1
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-14 82.4 78 55.1
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.7e-14 81.6 73 56.2
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.7e-14 81.6 78 53.8
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 4.7e-14 80.9 80 55.0
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 4.7e-14 80.9 81 55.6
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 6.1e-14 80.5 62 59.7
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.0e-13 79.7 47 76.6
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.3e-13 78.6 67 55.2
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 2.3e-13 78.6 63 58.7
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.3e-13 78.6 52 65.4
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 3.0e-13 78.2 47 74.5
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 5.2e-13 77.4 62 58.1
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 5.2e-13 77.4 80 50.0
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 5.2e-13 77.4 79 50.6
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 5.2e-13 77.4 79 50.6
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 5.2e-13 77.4 79 51.9
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 6.8e-13 77.0 80 53.8
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.8e-13 76.6 69 56.5
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.0e-12 75.5 62 59.7
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.4e-12 74.7 64 53.1
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.3e-11 72.8 45 66.7
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.8e-11 71.6 65 56.9
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 8.3e-11 70.1 59 55.9
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.8e-10 68.9 45 68.9
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 2.4e-10 68.6 67 59.7
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 3.1e-10 68.2 59 61.0
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 7.0e-10 67.0 51 56.9
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 2.0e-09 65.5 57 54.4
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 2.7e-09 65.1 56 57.1
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 5.0e-08 60.8 48 60.4
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.5e-07 58.5 35 74.3
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.1e-06 55.5 43 60.5


User provided reference genes

Program Settings