Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1417.1 735 100.0
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1410.2 735 99.5
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1395.2 741 98.1
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1374.8 735 97.3
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1372.5 741 96.8
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1369.8 735 96.7
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 0.0e+00 1328.2 742 94.1
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1318.5 742 94.1
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1311.2 744 93.7
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1310.0 742 93.4
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1305.0 742 92.7
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 0.0e+00 1302.3 742 92.0
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 0.0e+00 1300.4 743 92.6
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 0.0e+00 1294.6 742 91.6
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 0.0e+00 1293.1 743 91.5
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 0.0e+00 1290.0 743 91.3
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1276.2 737 91.9
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 0.0e+00 1255.4 748 89.0
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 0.0e+00 1161.7 751 83.0
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 6.3e-305 1050.4 747 75.2
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 4.1e-296 1021.1 749 73.6
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 2.2e-294 1015.4 748 73.4
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 8.0e-292 1006.9 733 73.7
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 8.8e-291 1003.4 746 72.5
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.8e-289 998.4 748 71.8
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 6.3e-289 997.3 748 73.0
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 3.8e-286 988.0 752 71.0
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 3.6e-284 981.5 745 70.5
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 6.1e-284 980.7 747 71.5
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.2e-282 976.5 748 70.5
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 1.2e-282 976.5 741 70.9
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 2.0e-282 975.7 748 70.6
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 5.7e-282 974.2 748 70.6
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 7.5e-282 973.8 747 70.3
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.7e-281 972.6 748 70.1
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 2.2e-281 972.2 748 69.3
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.8e-281 971.1 763 69.5
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 8.3e-281 970.3 763 69.3
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.1e-280 969.9 746 70.6
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.4e-280 969.5 746 70.5
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.1e-280 968.0 746 69.8
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 4.1e-280 968.0 746 71.8
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 2.0e-279 965.7 746 70.9
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 4.5e-279 964.5 744 71.8
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.5e-277 958.7 763 68.5
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 3.2e-277 958.4 747 69.5
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 2.1e-276 955.7 747 69.6
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 2.8e-276 955.3 752 68.6
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 6.1e-276 954.1 737 69.9
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 1.8e-275 952.6 758 69.4
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.8e-275 952.6 747 69.6
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 5.2e-275 951.0 748 68.7
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 8.8e-275 950.3 750 69.2
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 8.8e-275 950.3 745 69.4
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.0e-274 949.1 717 71.7
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.5e-274 947.2 746 69.4
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 9.8e-274 946.8 746 69.7
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.8e-273 945.3 746 68.8
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 2.8e-273 945.3 752 69.3
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.4e-272 943.0 746 68.5
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.2e-271 939.9 746 68.5
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 7.8e-271 937.2 746 68.6
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 5.0e-270 934.5 747 69.6
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 8.6e-270 933.7 747 68.5
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 1.1e-269 933.3 748 68.9
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.9e-269 932.6 747 68.7
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 3.3e-269 931.8 747 67.2
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 4.3e-269 931.4 745 67.9
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.4e-267 926.4 746 67.7
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.3e-267 925.6 745 67.2
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 2.6e-266 922.2 746 68.4
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 3.4e-266 921.8 748 68.9
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 4.4e-266 921.4 750 67.5
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 5.7e-266 921.0 748 68.7
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 3.7e-265 918.3 739 68.9
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.4e-264 916.4 743 67.6
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 1.8e-264 916.0 747 66.7
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.1e-264 914.8 749 66.2
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.2e-264 913.7 765 67.3
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 1.2e-263 913.3 747 68.3
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.0e-262 910.2 744 67.1
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 1.7e-262 909.4 744 67.5
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 2.3e-262 909.1 747 66.5
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 6.6e-262 907.5 731 68.0
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.5e-261 905.6 744 66.9
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 7.3e-261 904.0 747 66.4
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 1.2e-260 903.3 744 66.5
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.2e-260 901.0 765 66.4
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 1.1e-259 900.2 757 65.4
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.1e-259 898.7 747 67.6
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 8.9e-259 897.1 730 66.6
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.6e-258 895.6 751 66.0
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 4.9e-257 891.3 792 64.5
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 8.3e-257 890.6 747 67.3
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 4.1e-256 888.3 734 66.5
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 9.2e-256 887.1 743 66.4
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.6e-255 886.3 754 64.5
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 7.8e-255 884.0 731 65.5
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 1.3e-254 883.2 744 66.3
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.3e-254 883.2 744 66.1
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 3.0e-254 882.1 728 67.0
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 1.9e-253 879.4 730 65.5
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.5e-253 879.0 750 64.9
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 9.5e-253 877.1 700 67.3
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 4.7e-252 874.8 760 64.6
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 6.2e-252 874.4 746 64.7
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.8e-251 872.8 751 64.2
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 6.8e-251 870.9 747 64.1
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 8.9e-251 870.5 731 67.3
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 7.5e-250 867.5 733 65.5
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.9e-249 864.8 730 65.5
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 4.9e-249 864.8 754 62.2
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 4.9e-249 864.8 728 66.3
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 4.9e-249 864.8 728 66.3
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 3.2e-248 862.1 731 67.0
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.2e-247 860.1 790 61.9
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 4.6e-247 858.2 736 64.5
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 6.0e-247 857.8 746 64.7
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 2.1e-244 849.4 723 64.9
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 9.9e-242 840.5 751 62.3
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 5.4e-240 834.7 714 65.5
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 7.1e-240 834.3 733 63.6
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 9.2e-240 833.9 788 60.3
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 2.1e-239 832.8 743 62.9
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.5e-237 825.9 725 62.9
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 9.3e-232 807.4 752 60.9
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 7.8e-231 804.3 776 60.1
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 2.0e-226 789.6 803 59.8
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 2.3e-222 776.2 749 59.7
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 2.1e-220 769.6 752 60.4
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.4e-219 766.9 553 73.2
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 3.4e-210 735.7 738 57.3
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 1.6e-207 726.9 766 55.2
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 1.9e-205 719.9 733 58.0
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 3.1e-203 712.6 728 56.6
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 3.2e-192 676.0 440 79.1
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 5.9e-186 655.2 767 52.0
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 8.8e-182 641.3 737 52.2
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 2.9e-169 599.7 656 53.8
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 7.7e-162 575.1 580 58.1
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 7.7e-162 575.1 372 80.6
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.2e-138 498.0 742 44.1
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 4.9e-132 476.1 439 61.5
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.7e-129 467.6 619 46.4
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 6.2e-127 459.1 303 79.2
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 6.4e-124 449.1 757 41.5
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 6.4e-124 449.1 757 41.5
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 4.0e-118 429.9 772 40.2
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.2e-115 420.2 455 50.8
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 4.8e-111 406.4 448 54.0
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 4.6e-98 363.2 360 56.4
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.1e-89 333.2 287 65.2
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 1.1e-88 332.0 258 69.4
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 3.3e-88 330.5 482 42.5
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 1.0e-84 318.9 282 62.8
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 3.3e-80 303.9 184 84.2
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.7e-71 275.0 355 47.6
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.9e-65 253.8 611 36.8
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 3.7e-63 247.3 416 39.2
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 1.2e-53 215.7 460 36.1
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.6e-50 205.3 635 34.3
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 5.2e-49 200.3 632 29.1
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 6.1e-42 176.8 260 45.4
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 1.7e-39 168.7 107 76.6
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.9e-36 157.9 131 64.9
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 7.5e-32 143.3 72 97.2
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 7.5e-32 143.3 72 97.2
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 2.2e-31 141.7 166 51.8
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 1.2e-29 136.0 72 95.8
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 1.6e-29 135.6 90 72.2
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.6e-29 135.6 90 72.2
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 4.6e-29 134.0 76 89.5
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-25 122.5 293 35.8
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.5e-19 102.4 51 94.1
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 7.3e-19 100.1 276 35.1
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 2.3e-17 95.1 226 33.2
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 4.0e-17 94.4 50 90.0
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 4.0e-17 94.4 60 70.0
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 1.7e-15 89.0 220 33.6
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.9e-14 85.5 84 58.3
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 4.1e-14 84.3 69 65.2
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 4.1e-14 84.3 60 63.3
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.1e-13 82.0 85 54.1
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 5.2e-09 67.4 87 48.3


User provided reference genes

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