Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3806.9 1927 100.0
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 3774.6 1945 98.3
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3769.2 1954 97.8
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 3724.1 1935 97.4
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 3714.1 1955 96.3
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 3478.0 1933 91.1
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 3434.0 1933 89.5
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 3419.4 1792 96.3
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 3348.9 1943 87.3
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 3332.3 1924 87.5
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 3323.9 1932 87.1
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 3305.0 1932 86.6
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 3067.3 1979 78.6
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2815.8 1941 73.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2232.2 1963 57.8
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2226.1 1967 58.4
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2219.9 1967 57.8
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2209.5 1958 57.7
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2198.7 1964 57.4
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2194.5 1959 57.6
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2192.2 1963 57.4
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2181.0 1956 57.8
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2169.8 1957 57.3
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2164.0 1956 57.2
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2162.5 1967 56.7
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2152.1 1977 56.8
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2151.7 1964 56.5
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2144.4 2028 55.2
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2134.0 1961 55.8
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2129.8 1965 56.4
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2129.4 1958 56.0
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2124.0 1965 55.9
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2115.1 1962 56.1
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2096.6 1964 55.6
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2095.5 1945 56.1
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2093.9 1969 55.5
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2087.8 1943 55.9
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2082.8 1954 55.6
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2065.4 1966 54.9
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2063.1 1958 54.4
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2059.6 1922 55.6
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2057.7 2159 51.5
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2050.8 1961 54.4
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2045.4 1971 55.0
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2038.8 1955 54.8
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2029.6 1849 56.3
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2014.2 1949 53.7
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2014.2 1957 53.6
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2013.8 2164 50.5
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2008.8 1963 53.0
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1998.0 1952 53.0
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1997.6 2263 48.6
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1987.2 1798 56.1
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1986.8 1964 52.9
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1986.1 1966 53.0
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1984.9 1974 52.4
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1975.3 1950 52.4
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1971.8 2140 50.5
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1969.1 1962 52.5
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1966.8 1842 54.9
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1955.6 1974 53.0
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1951.4 1970 52.0
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1945.6 1926 52.4
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1942.2 1947 53.3
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1931.4 1956 52.2
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1931.0 1967 51.7
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1922.9 1936 52.9
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1914.0 1955 52.0
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1902.1 1956 51.7
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1889.0 1605 59.9
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1865.1 1947 51.2
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1864.7 1953 51.2
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1847.4 1933 51.5
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1840.9 1995 50.2
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1819.3 1954 50.4
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1814.3 1922 49.6
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1753.4 1973 47.5
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1520.0 1180 63.9
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1422.9 1278 57.1
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1353.6 1276 54.9
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1334.7 1823 40.8
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1231.5 1988 38.1
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1229.9 2058 36.5
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1191.4 1081 57.0
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1159.8 2017 35.9
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1110.1 1421 44.7
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1084.7 991 56.2
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 1.8e-298 1030.4 1172 49.0
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 6.1e-291 1005.4 2134 33.0
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 8.6e-253 878.6 783 57.1
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.1e-247 861.7 1105 45.1
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.0e-237 827.0 1004 45.0
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 1.5e-233 814.7 957 48.0
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.6e-219 768.1 521 75.8
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 5.8e-217 759.6 972 45.3
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.5e-212 745.0 885 46.8
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 2.2e-208 731.1 783 51.2
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.2e-161 575.9 489 59.9
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 1.2e-158 565.8 655 48.4
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 2.9e-152 544.7 523 51.6
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 2.9e-144 518.1 525 51.2
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 4.3e-127 461.1 654 41.3
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 7.5e-124 450.3 393 58.5
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 3.0e-120 438.3 341 69.5
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 5.1e-120 437.6 451 48.3
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.9e-119 435.6 291 72.2
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 8.4e-115 420.2 433 48.3
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 7.8e-105 387.1 847 31.9
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.0e-96 360.1 224 76.8
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.7e-86 325.1 258 60.9
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.1e-82 313.5 380 44.7
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 1.0e-80 307.0 341 51.3
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.5e-58 232.6 227 51.1
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.1e-53 217.2 315 41.0
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 4.7e-49 201.8 192 51.6
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 8.0e-49 201.1 192 50.5
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 8.0e-49 201.1 288 44.8
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.4e-45 190.3 514 29.2
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.1e-45 187.6 237 47.7
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 4.5e-44 185.3 335 37.0
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.0e-41 174.5 293 34.8
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 2.0e-39 169.9 145 64.1
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 4.4e-39 168.7 281 38.4
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 4.8e-38 165.2 125 67.2
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.1e-34 154.1 164 46.3
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 4.4e-31 142.1 141 48.9
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 7.5e-31 141.4 104 71.2
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.1e-29 137.5 579 25.0
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.5e-26 127.1 93 67.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 2.1e-25 123.2 191 39.3
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.4e-24 120.6 291 30.9
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 2.0e-23 116.7 221 34.4
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 9.8e-23 114.4 107 53.3
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.1e-21 110.9 120 48.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.4e-21 110.5 118 48.3
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 5.4e-21 108.6 94 56.4
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.2e-21 107.8 140 44.3
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.0e-19 104.4 163 41.1
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.3e-19 104.0 116 50.9
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.3e-19 104.0 116 50.9
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.3e-19 104.0 89 57.3
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.3e-19 104.0 89 57.3
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.0e-19 102.8 89 56.2
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 3.6e-17 95.9 145 43.4
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.0e-16 94.4 137 40.9
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 3.1e-16 92.8 131 42.7
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.5e-15 90.5 208 28.8
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 1.2e-12 80.9 95 43.2
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 1.3e-11 77.4 88 42.0
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.7e-11 77.0 58 58.6
BcaC08g43232 Brassica carinata HOM05D004963 ORTHO05D039387 1.1e-10 74.3 56 69.6
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.8e-09 69.7 126 34.9
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 4.7e-09 68.9 87 43.7
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 8.1e-09 68.2 72 41.7
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 5.2e-08 65.5 51 58.8
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 3.7e-06 59.3 139 29.5


User provided reference genes

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